BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0040.p
         (708 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313640|ref|YP_003777732.1| primosomal protein N' [Herbaspi...  1422   0.0  

>gi|300313640|ref|YP_003777732.1| primosomal protein N'
           [Herbaspirillum seropedicae SmR1]
          Length = 708

 Score = 1422 bits (3682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/708 (99%), Positives = 706/708 (99%)

Query: 1   VEQRILQVALDTPLHTVFDYAWQAQAEGELVPAIGQLVVVPFGRREAVGVVVGHVSQSAL 60
           +EQRILQVALDTPLHTVFDYAWQAQAEGELVPAIGQLVVVPFGRREAVGVVVGHVSQSAL
Sbjct: 1   MEQRILQVALDTPLHTVFDYAWQAQAEGELVPAIGQLVVVPFGRREAVGVVVGHVSQSAL 60

Query: 61  EQGKIKQVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALSTVALDKA 120
           EQGKIKQVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALSTVALDKA
Sbjct: 61  EQGKIKQVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALSTVALDKA 120

Query: 121 LKALGRLSAPKKSKARSKARAHPEDEARQETPAAEATPADPMQFAQAPALNSAQQEAADA 180
           L ALGRLSAPKKSKARSKARAHPEDEARQET AA+ATPADPMQFAQAPALN+AQQEAADA
Sbjct: 121 LNALGRLSAPKKSKARSKARAHPEDEARQETAAADATPADPMQFAQAPALNAAQQEAADA 180

Query: 181 IAAAHAFAPLLLYGVTGSGKTEVYLQAAAAILRRAAESGERAQILVLVPEINLTPQLEGN 240
           IAAAHAFAPLLLYGVTGSGKTEVYLQAAAAILRRAAESGERAQILVLVPEINLTPQLEGN
Sbjct: 181 IAAAHAFAPLLLYGVTGSGKTEVYLQAAAAILRRAAESGERAQILVLVPEINLTPQLEGN 240

Query: 241 IRARFPHLNVVALHSGLAEGERARNWLAAHLGQAQIVLGTRLAILASLPALKLIVIDEEH 300
           IRARFPHLNVVALHSGLAEGERARNWLAAHLGQAQIVLGTRLAILASLPALKLIVIDEEH
Sbjct: 241 IRARFPHLNVVALHSGLAEGERARNWLAAHLGQAQIVLGTRLAILASLPALKLIVIDEEH 300

Query: 301 DPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLELRQRAAR 360
           DPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLELRQRAAR
Sbjct: 301 DPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLELRQRAAR 360

Query: 361 EAVLPTVKVIDLERDKPVDGLTATLIAAVRKRLEQGEQSLLFLNRRGYAPVLACDACGWI 420
           EAVLPTVKVIDLERDKPVDGLTATLIAAVRKRLEQGEQSLLFLNRRGYAPVLACDACGWI
Sbjct: 361 EAVLPTVKVIDLERDKPVDGLTATLIAAVRKRLEQGEQSLLFLNRRGYAPVLACDACGWI 420

Query: 421 SNCMRCDAFMVVHRPERRLRCHHCSLELHIPRACPTCGNVDLQPLGRGTQRVEEGLQAIF 480
           SNCMRCDAFMVVHRPERRLRCHHCSLELHIPRACPTCGNVDLQPLGRGTQRVEEGLQAIF
Sbjct: 421 SNCMRCDAFMVVHRPERRLRCHHCSLELHIPRACPTCGNVDLQPLGRGTQRVEEGLQAIF 480

Query: 481 PEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLTLVGVLNPDTA 540
           PEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLTLVGVLNPDTA
Sbjct: 481 PEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLTLVGVLNPDTA 540

Query: 541 LFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQTRYPHHPLYQAVIRHDYDGF 600
           LFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQTRYPHHPLYQAVIRHDYDGF
Sbjct: 541 LFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQTRYPHHPLYQAVIRHDYDGF 600

Query: 601 AGELLEERRQAHFPPFMYQALLRAEARELDTAMAFLKDAATLLEAPAITINEPIPMTLMR 660
           AGELLEERRQAHFPPFMYQALLRAEARELDTAMAFLKDAATLLEAPAITINEPIPMTLMR
Sbjct: 601 AGELLEERRQAHFPPFMYQALLRAEARELDTAMAFLKDAATLLEAPAITINEPIPMTLMR 660

Query: 661 VANVERAQLLIECASRPVLQAFLKQWLALLRQVKTRARWSLEVDPVDI 708
           VANVERAQLLIECASRPVLQAFLKQWLALLRQVKTRARWSLEVDPVDI
Sbjct: 661 VANVERAQLLIECASRPVLQAFLKQWLALLRQVKTRARWSLEVDPVDI 708


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,064,116
Number of extensions: 82841
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 616
Effective length of database: 1,184,250
Effective search space: 729498000
Effective search space used: 729498000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)