BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0033.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferas...   634   0.0  
gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferas...    90   2e-19

>gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  634 bits (1635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/317 (99%), Positives = 316/317 (99%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60
           MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA
Sbjct: 1   MKIIFAGTPEFAAVALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60

Query: 61  QPVSLRLDGKYPEVAQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLP 120
           QPVSLRLDGKYPEVAQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLP
Sbjct: 61  QPVSLRLDGKYPEVAQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLP 120

Query: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALG 180
           RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALG
Sbjct: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALG 180

Query: 181 AKMIVEAMEKLEHGTLPATPQPEEGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240
           AKMIVEAMEKLE GTLPATPQPE+GANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG
Sbjct: 181 AKMIVEAMEKLEQGTLPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240

Query: 241 ATGRFGDTVVKLWKARAVTVAQQGEPGQVLSADAQGGIVVACGEGALLLTELQKPGGKRL 300
           ATGRFGDTVVKLWKARAVTVAQQGEPGQVLSADAQGGIVVACGEGALLLTELQKPGGKRL
Sbjct: 241 ATGRFGDTVVKLWKARAVTVAQQGEPGQVLSADAQGGIVVACGEGALLLTELQKPGGKRL 300

Query: 301 PAAEFLKGFPMEGGRLA 317
           PAAEFLKGFPMEGGRLA
Sbjct: 301 PAAEFLKGFPMEGGRLA 317


>gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 121/279 (43%), Gaps = 16/279 (5%)

Query: 15  ALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVAQPVSLRLDGKYPEV 74
            L+ L A G +++LV+T  D        +    V     +HG     P     D K P++
Sbjct: 15  CLKVLLARGVQVSLVVTHEDSATE---NIWFGSVAGVCREHGIACITPA----DPKSPQL 67

Query: 75  AQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLPRWRGAAPIHRAIEA 134
             +  A   + P D +    Y  +LP  VL   + G  N+HGSLLP++RG  PI+ A+  
Sbjct: 68  LAQVQA---AQP-DFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWAVLH 123

Query: 135 GDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALGAKMIVEAMEKLEHG 194
           G+ ETG T+ +M    D G ++   S+PI  +DT   +  K+       +   +  +  G
Sbjct: 124 GETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAMLSG 183

Query: 195 TLPATPQPEEGANYAAKIAKEEAALDFSQSAEQLARRIRAFN-PFPGATGRFGDTVVKLW 253
             P+ P      +Y      E+  +D+ ++A ++   +RA   P+PGA     D  + + 
Sbjct: 184 RTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKITVT 243

Query: 254 KARAV----TVAQQGEPGQVLSADAQGGIVVACGEGALL 288
           + R V      A Q   G        G +   CG+G  L
Sbjct: 244 RTRLVPPSAHPALQRAHGMQDKFFEGGKLYARCGDGNFL 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,086,624
Number of extensions: 48897
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)