BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0027.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter prot...   585   e-168

>gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 416

 Score =  585 bits (1509), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 337/393 (85%), Positives = 343/393 (87%), Gaps = 34/393 (8%)

Query: 1   MRLCITMVLMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA 60
           MRLCITMVLMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA
Sbjct: 24  MRLCITMVLMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGLLMGRMA 83

Query: 61  DRAGITRPLFLGGLCLGGGFIAASYAPDIWTFMAVHCLFIGLLGTSATFSPLVADTSLWF 120
           DRAGITRPLFLGGLCLGGGFIAASYAPDIWTFMAVHCLFIGLLGTSATFSPLVADTSLWF
Sbjct: 84  DRAGITRPLFLGGLCLGGGFIAASYAPDIWTFMAVHCLFIGLLGTSATFSPLVADTSLWF 143

Query: 121 RKRRGIAVAVCASGNYLGGAIWPPIVQYFVDNYGWQETYRGLGLICILVMCPLALLMRTR 180
           RKRRGIAVAVCASGNYLGGAIWPPIVQ+FVD+ GWQ+TY G+G+ C L+MC LALLMR R
Sbjct: 144 RKRRGIAVAVCASGNYLGGAIWPPIVQHFVDSVGWQQTYIGMGIACSLIMCSLALLMRAR 203

Query: 181 PPAQDSSAASARPXPARRP----------------------------------RTAGAPA 206
           PPAQDSSAASARP    RP                                     G   
Sbjct: 204 PPAQDSSAASARPGGGPRPFGLAPGSAQLLLCVAGVACCVAMAMPQVHIVAYCGDLGYGP 263

Query: 207 ARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGSMLQGLSLLLFIPFDSLASLYLI 266
           ARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGSMLQGLSLLLFIPFDSLASLYLI
Sbjct: 264 ARGAQMLSLMLACGVVSRLVSGAICDRIGGLRTLLLGSMLQGLSLLLFIPFDSLASLYLI 323

Query: 267 SALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGWVSGKIFDMTGSY 326
           SALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGWVSGKIFDMTGSY
Sbjct: 324 SALFGLFQGGIVPSYAIIVREYFPAAEAGQRVGAVIMATMFGMALGGWVSGKIFDMTGSY 383

Query: 327 HAAFANGIAWNLLNLAIALFLLTRVRSLHLRAA 359
           HAAFANGIAWNLLNLAIALFLLTRVRSLHLRAA
Sbjct: 384 HAAFANGIAWNLLNLAIALFLLTRVRSLHLRAA 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,820
Number of extensions: 27286
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)