BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0018.p
         (565 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane pr...  1112   0.0  

>gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score = 1112 bits (2876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/542 (100%), Positives = 542/542 (100%)

Query: 24  MRHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAPGAVPGADVAATATKG 83
           MRHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAPGAVPGADVAATATKG
Sbjct: 1   MRHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAPGAVPGADVAATATKG 60

Query: 84  ETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGP 143
           ETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGP
Sbjct: 61  ETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGP 120

Query: 144 FPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNTTG 203
           FPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNTTG
Sbjct: 121 FPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNTTG 180

Query: 204 AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNKTD 263
           AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNKTD
Sbjct: 181 AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNKTD 240

Query: 264 NGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQLYS 323
           NGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQLYS
Sbjct: 241 NGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQLYS 300

Query: 324 GPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKLIF 383
           GPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKLIF
Sbjct: 301 GPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKLIF 360

Query: 384 FPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIAIQ 443
           FPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIAIQ
Sbjct: 361 FPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIAIQ 420

Query: 444 IPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQ 503
           IPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQ
Sbjct: 421 IPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQ 480

Query: 504 TKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIESGK 563
           TKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIESGK
Sbjct: 481 TKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIESGK 540

Query: 564 TK 565
           TK
Sbjct: 541 TK 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,551,328
Number of extensions: 59968
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 475
Effective length of database: 1,193,720
Effective search space: 567017000
Effective search space used: 567017000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)