BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0098.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309665|ref|YP_003773757.1| 2,4-dihydroxyhept-2-ene-1,7-dio...    54   6e-09

>gi|300309665|ref|YP_003773757.1| 2,4-dihydroxyhept-2-ene-1,7-dioic
           acid aldolase [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score = 53.9 bits (128), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)

Query: 2   RFPPQGARGFAAMHRASRYGTWSEFGRRANEAVSCIVQLETPDAIARLEEIAAVPGVDAL 61
            + P+G R +    R   YG  +++   AN  +  +  +ET +  A  E I   P +D +
Sbjct: 110 HYSPRGGRSYGPA-RGFLYGG-ADYFTHANATLLTLAMIETREGYANAEAILQTPDLDGI 167

Query: 62  FLGPGDLSAAMGKIGN-LADAEVRAAIADVAQRARAVGKPVGIVGPTPAMVREFVAMGYD 120
           F+GP DL+  +G   +   D  +  AI  +   AR +GK VGI   T  M +    +G D
Sbjct: 168 FIGPSDLAIELGLAPDAYDDVRLNEAIDHLLALARKLGKYVGIFAGTMEMAQRMKGIGMD 227

Query: 121 YVAIASDM 128
            V   +D+
Sbjct: 228 LVVPGTDI 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,784
Number of extensions: 17499
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)