BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0097.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310365|ref|YP_003774457.1| galactose-1-epimerase [Herbaspi...   151   5e-38

>gi|300310365|ref|YP_003774457.1| galactose-1-epimerase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  151 bits (382), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 148/279 (53%), Gaps = 22/279 (7%)

Query: 12  LGGAIASASWRGQ----PVLRPSVEAQLQQGLVRRSACYPLLPFSNRIGNAQFAFDGQTY 67
           LGGA+A   W+ +    P+LRP          +  +AC+PLLP+SNRI    F FDG+ Y
Sbjct: 35  LGGALAGWEWQRERQWLPLLRP---WSADPAALYATACFPLLPWSNRITGGGFDFDGKHY 91

Query: 68  ALIANFDNEPHAIHGLGFQRAWQVQSSSAESLTMQLTHASPSPGQWPFALRATQVIAIEG 127
            L+ N   EP+ IHG  +++AW + + + + +T++L  +    G  P+  RA Q++ +  
Sbjct: 92  PLVPNRLGEPYPIHGDSWRQAWTITAQAEDRMTLEL-ESDRYDGN-PYVYRARQLLTLRE 149

Query: 128 DDLVLRLEVENTDHRRAPCGLGWHPFFPLDSAAQPTQLQTHWQAMLVNGPDKLPCGST-- 185
           + L + L V NT     P GLG HP+F  D+    T+LQ   + + ++GPD++P   T  
Sbjct: 150 NALEIELRVTNTGTETLPYGLGLHPYFLRDAQ---TRLQFRSRGVWLSGPDRIPTSFTRQ 206

Query: 186 --APPDTTQ---LDTLVIDNCFTGWSGQAVVTGPHHRITLTASPTLRC--AVLFRPPGQP 238
             A  D  +   L+  +IDNCF GW G A++  P   + L    T R    ++FRP  Q 
Sbjct: 207 LPAGWDYNRPATLEDKLIDNCFEGWDGLAMIEDPTRGLRLQMHTTDRSGYVLMFRPVKQA 266

Query: 239 FFAFEPVSHPNNALHG-VAPAMHILEPGQCLAGEMRLSL 276
           FF  EPV+HP +A H    P +  L PG+ +    R S+
Sbjct: 267 FFCLEPVTHPIDAFHRPKRPGLIDLAPGEDMVLLTRFSV 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 993,328
Number of extensions: 42729
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)