BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0085.p
         (862 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin...    60   8e-10

>gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin
           PapC protein [Herbaspirillum seropedicae SmR1]
          Length = 764

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 142/589 (24%), Positives = 232/589 (39%), Gaps = 62/589 (10%)

Query: 239 GVEISSDDRMLPDSLRGYAPVIRG-TARSNALVIVSQKAREIYRTTVAPGSFVIDDLYPT 297
           G + +SD  + PD +R   P + G T   + + +     R++ +  V PG F I      
Sbjct: 211 GFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQP-VPPGPFEIRQPPIA 269

Query: 298 SYNGDLDVTVIEADGSRAQLSVPFSALPESMRPGSSRYSLTLGRTR------DTETAALF 351
           S  G + V V +  G +   +V F A    ++PG S YS   G  R        +     
Sbjct: 270 SGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRHYGLRSNDYGQFA 329

Query: 352 LDTLYQRGLSNALTGNVGLRLASGYQSAVLGSTLAGRLGSLGLNLSYSHADTGHGNSGGW 411
           L    + G+S+ LT         G+  A+ G  L G  G    NL         GN    
Sbjct: 330 LSGTARHGVSDWLT-------LEGHAEAMHGLKLGG--GGAVFNL---------GNRAVL 371

Query: 412 MLGMAYSRSFEDTGTQFSIASYRYSTAGYRELVDVLSERQSNRAATAWLASSSSYQQQSR 471
              ++ S +   +G QFS+A  R +      L   LS  Q+ R      A   +   +S 
Sbjct: 372 ASALSASNAASGSGQQFSLAIERNAD----PLSLSLSRTQATRDYQDIGALQGAPVSRSA 427

Query: 472 FDMSVSQQLGSAGSLYLSGLTQTFYHNRSRITQMQFGYSTMWSNGMSMNLAFQRQQISAS 531
              ++   LGSAGSL ++     +  ++S +     G +T  ++  ++ L + +   S  
Sbjct: 428 TVATLGMNLGSAGSLSMA-----YARSKSPLLFTDLG-TTGLADSETLTLTYFK---SLG 478

Query: 532 SSSALELADGRQPSTSRPGSSVMLSLSIPLGKAGTERPVMSTSLVRTAAQDVLQSQVSGM 591
           S++++ L   R    S  G+SV   + IPLG     R V+  S+     Q     Q S  
Sbjct: 479 STASMYLTGYRDFRNSGYGASV--GIIIPLGG----RDVVGASMNNNNGQRTATLQAS-- 530

Query: 592 LPGPHRLSYSVGANHASGGRQDSLNGNLGARLSKADLNFNLARGRDYWQAAASTSTWRAG 651
                R + ++G     G +     G+   RL++ +    +           + S+ R G
Sbjct: 531 -----RSTVAIGD---LGWQLQDTEGSYQQRLAQLNYKSRVGSFSAGVSQGGTISSQRLG 582

Query: 652 GITGIARGALAVHGDGITFGPYLGDTFALIEAPGAKGARIFNGQ--GAVIDGNGFALLPS 709
                ARGALA    G+    ++ D+FA++ A G K   I+N        D NG  LL  
Sbjct: 583 -----ARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYNENRYAGRTDDNGQLLLTD 637

Query: 710 LSAYQRNVVELASAGSNSKSEILESQRIVIPYAGATLKLRFRTRAGHALLIRLLRDEGEP 769
           L AY  N + +         ++ +S + V P   + + + F  R    + + L    G  
Sbjct: 638 LRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNARRASDVTLTLKDAAGNY 697

Query: 770 LPMGADVLTEEGEVVGMVGQGSQAYLRSDSTRARLLVRWGDGQQERCTF 818
           LP+GA +   E  +   VG    +YL+  +    L V    G Q   T 
Sbjct: 698 LPIGASIRVRETGLEAPVGYDGVSYLQELAPLNTLDVLLPSGDQCHATL 746


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,599,923
Number of extensions: 108886
Number of successful extensions: 358
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 1
Length of query: 862
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 768
Effective length of database: 1,174,780
Effective search space: 902231040
Effective search space used: 902231040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)