BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0080.p (560 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 188 8e-49 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 171 1e-43 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 171 1e-43 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 167 2e-42 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 157 3e-39 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 188 bits (478), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 111/249 (44%), Positives = 149/249 (59%), Gaps = 3/249 (1%) Query: 204 KSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLM 263 K AD AN+AKS FLA VSHEIRTP++G +G ELL LS QR + I A L+ Sbjct: 338 KEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLV 397 Query: 264 GLVNDILDITKIESQSIKLDSEALQANDLLEECAQLFVPLALDKGLAFQCLPSVALEQAL 323 ++NDILD +KIES + L+ A L++E + L+ P K + F ++ Sbjct: 398 RIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSV 457 Query: 324 LGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRREG--ARLVVRFEVSDTGIGVSPSA 381 +GDP RL Q+L NL+ NA+KFT G + LS + E +R + F ++DTGIG+SP A Sbjct: 458 VGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEA 517 Query: 382 RQRIFKSLQQADDSISRRFGGTGLGLSLCRRLAELMGGDITLGSELGRGSVFGAEIALTP 441 Q++F+ QAD SISRRFGGTGLGL++ + L ELMGG I S G + F EI L P Sbjct: 518 LQQLFRPFAQADSSISRRFGGTGLGLAISKNLVELMGGTIACQSIPGESTRFSFEI-LCP 576 Query: 442 AAASGAVSP 450 A++ A P Sbjct: 577 EASTPAPEP 585 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 155/252 (61%), Gaps = 6/252 (2%) Query: 189 DLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREDLSPPQ 248 ++ K +A ++ AK A+ AN AKS F+A +SHE+RTPL+ +G+ ++L + PP Sbjct: 663 EIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPA 722 Query: 249 RQ-RIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEALQANDLLEECAQLFVPLALDK 307 R+ I +IR + + L+ L++ +LDI KIE+ ++L S+ L LE+ +F P A K Sbjct: 723 RKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQK 782 Query: 308 GLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRREGARLVVR 367 GL F+ S L Q + D +RL QIL NL+GNAVKFT G +TL R AR + Sbjct: 783 GLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRY-----AREIAY 837 Query: 368 FEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGLSLCRRLAELMGGDITLGSEL 427 F+V DTGIG++ R+RIF +++ + R GTGLGL++ R L +MGG++++ S++ Sbjct: 838 FDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQV 897 Query: 428 GRGSVFGAEIAL 439 G+GS F +I L Sbjct: 898 GQGSSFHLKIYL 909 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 166/311 (53%), Gaps = 9/311 (2%) Query: 168 LGAVWSRTRFSGQDVLLLGMIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRT 227 L A+W + LL ++ N + A + + +AK AD A + FL+ +SHEIRT Sbjct: 48 LAAIWGIHALT-----LLRLLRENARTAEK--LVQAKEAADHAMLTRGAFLSTMSHEIRT 100 Query: 228 PLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEAL 287 P++ +G LL L Q + + I + L+G+VND+LD +KI+ + + Sbjct: 101 PMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEF 160 Query: 288 QANDLLEECAQLFVPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQ 347 ++E A+ A +K + L L+GDP R+ QIL NL+GNA+KFT Sbjct: 161 DLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHA 220 Query: 348 GRITLSTRLLRREGARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGL 407 G + L + L+ VRFEV D+GIG+ +R+F QAD S++R++GGTGLGL Sbjct: 221 GEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGL 280 Query: 408 SLCRRLAELMGGDITLGSELGRGSVFGAEIALTPAAASGAVSPQPELAGRS--VALHCRD 465 S+C+RL ELMGG I + S LG GS F E+ + G + +P A R +AL Sbjct: 281 SICKRLVELMGGSIGVESALGTGSCFWFELGIPVTTGPGMIRSEPPAADRPRRIALVEPH 340 Query: 466 AAMAAMLGDYL 476 A AAML +YL Sbjct: 341 DASAAMLHEYL 351 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/265 (40%), Positives = 158/265 (59%), Gaps = 10/265 (3%) Query: 184 LLGMIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLARE- 242 LL + ++ K L+ +A + +RANQ KS FLA +SHE+RTPL+ + +LLA Sbjct: 446 LLELQKDDLAKTQVVLVEKATEL-ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNK 504 Query: 243 --DLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEALQANDLLEECAQLF 300 +LS Q + + I A + L+ L+NDILD++K+E+ + + E+ L +E + F Sbjct: 505 QGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASF 564 Query: 301 VPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRRE 360 A KGL F+ + Q + D +RL QIL+NL+ NA+KFT +G ++L R+ Sbjct: 565 AITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSL--RIYPDA 622 Query: 361 GARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGLSLCRRLAELMGGD 420 G R+ F V DTGIG+ Q IF++ +QAD S R++GGTGLGLS+ R LA L+GGD Sbjct: 623 GGRIA--FAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGD 680 Query: 421 ITLGSELGRGSVFGAEIALTPAAAS 445 I + S LG GS+F ++L P +S Sbjct: 681 IRVTSRLGEGSIFT--LSLPPLYSS 703 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 175/302 (57%), Gaps = 11/302 (3%) Query: 162 EGGVSHLGA-VWSRTRFSGQDVLLLGM-IDLNMQKAHEALMREAKSMADRANQAKSMFLA 219 +GG+ ++ A + + +G+ V ++ + +D+ + E + +A+ A++AN AKS+FLA Sbjct: 843 DGGIRYVQARAYVQRDGAGRPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLA 902 Query: 220 QVSHEIRTPLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQS 279 VSHEIRTP++G +G ++LL R P Q+ ++ + L+ L+ND+LD +K++++ Sbjct: 903 SVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQ 962 Query: 280 IKLDSEALQANDLLEECAQLFVPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVG 339 ++LD +A + A + G++ L + L+GD RL Q+L NL G Sbjct: 963 LQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLVGDAHRLQQVLVNLTG 1022 Query: 340 NAVKFTAQGRITLS-TRLLRREGARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISR 398 NA+KFT QG I + TRL G + +R EVSDTGIG++ IF + QA+ S +R Sbjct: 1023 NALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTR 1082 Query: 399 RFGGTGLGLSLCRRLAELMGGDITLGSELGRGSVFGAEIALT--------PAAASGAVSP 450 R+GGTGLGL++ + L LMGG + + SE GRGS F ++ L PAAA A P Sbjct: 1083 RYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWFDLQLAVDDDSVLGPAAADDAARP 1142 Query: 451 QP 452 QP Sbjct: 1143 QP 1144 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,778,850 Number of extensions: 77016 Number of successful extensions: 390 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 351 Number of HSP's successfully gapped: 33 Length of query: 560 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 470 Effective length of database: 1,193,720 Effective search space: 561048400 Effective search space used: 561048400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)