BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0079.p (683 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 165 1e-41 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 149 5e-37 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 138 2e-33 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 132 1e-31 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 129 9e-31 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 165 bits (417), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 126/206 (61%), Gaps = 2/206 (0%) Query: 243 KSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLM 302 K AD AN+AKS FLA VSHEIRTP++G +G ELL LS QR + I A L+ Sbjct: 338 KEEADHANEAKSHFLAMVSHEIRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLV 397 Query: 303 GLVNDILDITKIESQSIKLDSEALQANDLLEECAQLFVPLALDKGLAFQCLPSVALEQAL 362 ++NDILD +KIES + L+ A L++E + L+ P K + F ++ Sbjct: 398 RIINDILDFSKIESGKLDLEMVAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSV 457 Query: 363 LGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRREG--ARLVVRFEVSDTGIGVSPSA 420 +GDP RL Q+L NL+ NA+KFT G + LS + E +R + F ++DTGIG+SP A Sbjct: 458 VGDPARLKQVLGNLLSNAIKFTQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEA 517 Query: 421 RQRIFKSLQQADDSISRRFGGTGLGL 446 Q++F+ QAD SISRRFGGTGLGL Sbjct: 518 LQQLFRPFAQADSSISRRFGGTGLGL 543 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 149 bits (377), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 169/343 (49%), Gaps = 44/343 (12%) Query: 228 DLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLAREDLSPPQ 287 ++ K +A ++ AK A+ AN AKS F+A +SHE+RTPL+ +G+ ++L + PP Sbjct: 663 EIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPA 722 Query: 288 RQ-RIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEALQANDLLEECAQLFVPLALDK 346 R+ I +IR + + L+ L++ +LDI KIE+ ++L S+ L LE+ +F P A K Sbjct: 723 RKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQK 782 Query: 347 GLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRREGARLVVR 406 GL F+ S L Q + D +RL QIL NL+GNAVKFT G +TL R AR + Sbjct: 783 GLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRY-----AREIAY 837 Query: 407 FEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGL-------------------- 446 F+V DTGIG++ R+RIF +++ + R GTGLGL Sbjct: 838 FDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQV 897 Query: 447 ----------------MPALRTTV-DPAPVEVSAGLDVLVVEDDYVNLTLIQQQLQALGC 489 +P R + D +LVV+D L++ L LG Sbjct: 898 GQGSSFHLKIYLPEVHVPRPRIKLEDQMSGYAGPSRHILVVDDQASQRRLLKDMLMPLGF 957 Query: 490 ASPRLARDGLDALAQWQARPADLLITDLGMPGLDGVSLATRVR 532 A GL + DL++ D+ MP +DG S+A +R Sbjct: 958 TVSE-ADSGLACMETLGHALPDLVLLDIAMPQMDGWSVARAIR 999 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 223 LLGMIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRTPLHGAIGHMELLARE- 281 LL + ++ K L+ +A + +RANQ KS FLA +SHE+RTPL+ + +LLA Sbjct: 446 LLELQKDDLAKTQVVLVEKATEL-ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNK 504 Query: 282 --DLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEALQANDLLEECAQLF 339 +LS Q + + I A + L+ L+NDILD++K+E+ + + E+ L +E + F Sbjct: 505 QGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASF 564 Query: 340 VPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQGRITLSTRLLRRE 399 A KGL F+ + Q + D +RL QIL+NL+ NA+KFT +G ++L R+ Sbjct: 565 AITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSL--RIYPDA 622 Query: 400 GARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGL 446 G R+ F V DTGIG+ Q IF++ +QAD S R++GGTGLGL Sbjct: 623 GGRIA--FAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGL 667 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 147/249 (59%), Gaps = 3/249 (1%) Query: 201 EGGVSHLGA-VWSRTRFSGQDVLLLGM-IDLNMQKAHEALMREAKSMADRANQAKSMFLA 258 +GG+ ++ A + + +G+ V ++ + +D+ + E + +A+ A++AN AKS+FLA Sbjct: 843 DGGIRYVQARAYVQRDGAGRPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLA 902 Query: 259 QVSHEIRTPLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQS 318 VSHEIRTP++G +G ++LL R P Q+ ++ + L+ L+ND+LD +K++++ Sbjct: 903 SVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQ 962 Query: 319 IKLDSEALQANDLLEECAQLFVPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVG 378 ++LD +A + A + G++ L + L+GD RL Q+L NL G Sbjct: 963 LQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLPRRLVGDAHRLQQVLVNLTG 1022 Query: 379 NAVKFTAQGRITLS-TRLLRREGARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISR 437 NA+KFT QG I + TRL G + +R EVSDTGIG++ IF + QA+ S +R Sbjct: 1023 NALKFTHQGHIDVHFTRLDPLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTR 1082 Query: 438 RFGGTGLGL 446 R+GGTGLGL Sbjct: 1083 RYGGTGLGL 1091 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 7/240 (2%) Query: 207 LGAVWSRTRFSGQDVLLLGMIDLNMQKAHEALMREAKSMADRANQAKSMFLAQVSHEIRT 266 L A+W + LL ++ N + A + + +AK AD A + FL+ +SHEIRT Sbjct: 48 LAAIWGIHALT-----LLRLLRENARTAEK--LVQAKEAADHAMLTRGAFLSTMSHEIRT 100 Query: 267 PLHGAIGHMELLAREDLSPPQRQRIELIRHAFDMLMGLVNDILDITKIESQSIKLDSEAL 326 P++ +G LL L Q + + I + L+G+VND+LD +KI+ + + Sbjct: 101 PMNAVLGMAGLLRSTRLDTQQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEF 160 Query: 327 QANDLLEECAQLFVPLALDKGLAFQCLPSVALEQALLGDPRRLMQILQNLVGNAVKFTAQ 386 ++E A+ A +K + L L+GDP R+ QIL NL+GNA+KFT Sbjct: 161 DLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHA 220 Query: 387 GRITLSTRLLRREGARLVVRFEVSDTGIGVSPSARQRIFKSLQQADDSISRRFGGTGLGL 446 G + L + L+ VRFEV D+GIG+ +R+F QAD S++R++GGTGLGL Sbjct: 221 GEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGL 280 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,063,752 Number of extensions: 89676 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 464 Number of HSP's successfully gapped: 28 Length of query: 683 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 591 Effective length of database: 1,184,250 Effective search space: 699891750 Effective search space used: 699891750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)