BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0078.p (300 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312961|ref|YP_003777053.1| transcription regulator protein... 595 e-171 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 254 7e-69 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 189 2e-49 gi|300309864|ref|YP_003773956.1| LysR family transcription regul... 167 7e-43 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 163 2e-41 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 595 bits (1533), Expect = e-171, Method: Compositional matrix adjust. Identities = 294/300 (98%), Positives = 297/300 (99%) Query: 1 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 +ELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GKFFYEQTLHVLSRLEQIEEGTRVIARGQQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 GKFFYEQTL VLSRLEQIEEGTRVIARG+QHWFNIGFVPSALYGLLPEMIKRFRTEMPEI Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIEEEPLVAVFPLGHPLLARNK 180 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETI EEPLVAVFPLGHPLLARNK Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARNK 180 Query: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT Sbjct: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 Query: 241 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSVLLERLRATAATIARLHAQEYT 300 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRS+LLERLR TAATIARLHAQEYT Sbjct: 241 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLERLRTTAATIARLHAQEYT 300 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 254 bits (649), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 132/296 (44%), Positives = 194/296 (65%), Gaps = 3/296 (1%) Query: 1 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 +++R LKYF AVA+T +F+RA+E LHIAQPPLSRQI+ LEE LGV+L+ R SRP+ LT A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GKFFYEQTLHVLSRLEQIEEGTRVIARGQQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 G+ FYEQ L +L+RL+Q++ T+ I Q+ +IGFV S LYG LP ++++ R PE+ Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 Query: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIEEEPLVAVFPLGHPLLARN- 179 +I E+ +M+Q ALKSGRIDVGFGR+ +D + + EE LV P L N Sbjct: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 Query: 180 KVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGV 239 +V+L ++ Q+ I+YP PRPS+AD +L + + + + P+ V E E+QTA+GLVAA G+ Sbjct: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 Query: 240 TLVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSVLLERLRATAATIARLH 295 L+P S + R+D+ YR + + SP+I+ R ND + +E ++ A + H Sbjct: 241 CLIPASAR--LRNDLHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVADMYAEH 294 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 146/283 (51%), Gaps = 11/283 (3%) Query: 1 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 +ELRHL YF VA TL F RAAELLHI+QPPL+RQI LE+ LG +L DR+ R I LT A Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 61 GKFFYEQTLHVLSRLEQIEEGTRVIARGQQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 GK+FY T + LE+ + + G+ +GF+ S Y +LP + + + PE+ Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 Query: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIEEEPLVAVFPLGHPLLARNK 180 ++ +E V ++ +IDVG P + TI EPL+AV P H L R Sbjct: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQS 181 Query: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 ++ A+LA FI P P D + RP IV E N QT + LV G+GV Sbjct: 182 ISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVA 241 Query: 241 LVPRSVQGLHRSDVVYRPL-----------SNKGVHSPVIMNF 272 LVP S+Q +H V++PL NK +P I F Sbjct: 242 LVPTSMQAMHLDTTVFKPLIGAPMVEVAVIWNKDNTNPCIRTF 284 >gi|300309864|ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 167 bits (424), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 90/275 (32%), Positives = 155/275 (56%) Query: 1 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 ++L ++ F A+ L+F RAA LL++ QPPLSRQI LE LGV+L +R R + LT Sbjct: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 Query: 61 GKFFYEQTLHVLSRLEQIEEGTRVIARGQQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 G+ F +L EQ E R ++G+ +GF +A Y L+PE++ + RT +PEI Sbjct: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 Query: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIEEEPLVAVFPLGHPLLARNK 180 ++ E++++ Q+EA + ID+GF R S + + ++EE LV P GH L A ++ Sbjct: 122 DVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYDR 181 Query: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 + QL Q FI++ + ++++ + + ++P + ++ T + LV AG+GV Sbjct: 182 IATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGVG 241 Query: 241 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRAN 275 ++P S Q H V +RPL+++ + + M +R + Sbjct: 242 ILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPD 276 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 155/289 (53%), Gaps = 8/289 (2%) Query: 1 VELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 +ELR L+YF AVA + F RAA LH+ QPPLS+ I LEE+LG L R R +ALT A Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 61 GKFFYEQTLHVLSRLEQIEEGTRVIARGQQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 G + +L + + + R A G ++ F+ SA Y +LP +++RFR P++ Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFRAHYPQV 126 Query: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIE-----EEPLVAVFPLGHPL 175 +I E T Q+E L G+ID G P+ P+ +E EPL+A P G + Sbjct: 127 QIELREATTDVQLEDLLQGKIDAGLLLPPL--PEKAAALLEVRPVLSEPLIAALPEGA-V 183 Query: 176 LARNKVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAA 235 R V+L L I++P R P++ D +L F + P I +EA +MQT +GLV+A Sbjct: 184 RKRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSA 243 Query: 236 GVGVTLVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSVLLERL 284 G+G+ LVP+SV L R V YR LS+ + +R + S +L L Sbjct: 244 GMGMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRAL 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 792,439 Number of extensions: 30458 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 63 Length of query: 300 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 215 Effective length of database: 1,217,395 Effective search space: 261739925 Effective search space used: 261739925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)