BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0064.p (219 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 437 e-124 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 122 2e-29 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 118 4e-28 gi|300312077|ref|YP_003776169.1| response regulator containing a... 108 3e-25 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 95 5e-21 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG Sbjct: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA Sbjct: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL Sbjct: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS 219 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS Sbjct: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS 219 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 10/218 (4%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M RI+L DDH L RSGI+ LL P ++VVGEA DG + ++ QL+PD+VL+D+ M G Sbjct: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 ++GLEA++ + + P LMLS+ + + AL+ GA GYL K+ A L +++ Sbjct: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAE---PTDKLTARERATMVCIARGQSNKEIA 177 G + ++ R N A+ P + LT R+R + IA G + KEIA Sbjct: 121 HGRQYLDSHIS-------REALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIA 173 Query: 178 RSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 L V+ T++ H L+ +L + + YA+ G+ Sbjct: 174 YQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 12/208 (5%) Query: 5 ILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSGL 64 I+L+DDH L R G+R L+ P ++VV EA + + A D+ LMD+NM G++G+ Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 65 EAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAGEP 124 E L PE AVL+LS+ ++A+ + ++ GARGY+LK+ + +V +I+ +G Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 125 VISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVAE 184 S ++ +L L P + LT RER ++ IA G+SNK+IAR L+++ Sbjct: 134 YYSAALARQLTQPL------------PPRELLTQREREVLMHIANGESNKQIARELDLSV 181 Query: 185 STVKIHVQNLLRKLQLSSRVQIAVYAVE 212 TV+ H N+ RKL + + ++ +AVE Sbjct: 182 RTVETHRLNIKRKLNIDGQAELIKFAVE 209 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 108 bits (270), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 2 AIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGL 61 AI++L+ DDH + R G+R + DI V G A +GL+ +K A + DV+L+D+ +P Sbjct: 8 AIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDR 67 Query: 62 SGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAA 121 +G++ ++ I ++ PE VL+LS+ E AL GA G+L K L+ +I++AA+ Sbjct: 68 NGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAAS 127 Query: 122 GEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLE 181 G +S S+ +L Q+ P + L+ RE TMV IA G++ +IA L Sbjct: 128 GRKYVSPSLAQELANQIGFDHETPL------HETLSDREYQTMVMIASGKTVSDIAAELT 181 Query: 182 VAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 ++ T+ ++ +L K+++ ++ YA+++ L Sbjct: 182 LSVKTISMYRSRVLSKMKMRHNAELTHYALKNAL 215 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 7/212 (3%) Query: 4 RILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSG 63 +IL+VDDH + R+G+ + P +++ GEA + ++ D+VL+D+ MP SG Sbjct: 3 KILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSG 62 Query: 64 LEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAGE 123 +E ++ I ++ PE VLMLS+ E+ L +GA GY+ K A LV +I G Sbjct: 63 VEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGH 122 Query: 124 PVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEVA 183 IS + L P S + L+ RE + +GQ +IA L ++ Sbjct: 123 KYISYGVAELL-------TSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLS 175 Query: 184 ESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 TV + +L+K+ +++ I YA+++ L Sbjct: 176 VKTVSTYRSRVLQKMSMTNNADIIYYAIKNNL 207 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 544,654 Number of extensions: 18719 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 21 Length of query: 219 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 137 Effective length of database: 1,231,600 Effective search space: 168729200 Effective search space used: 168729200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)