BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0061.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...   665   0.0  
gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   196   3e-51

>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/333 (97%), Positives = 331/333 (99%)

Query: 1   MAASTHPPAVLQDRFGRRISYLRVSVTDRCDLRCSYCLPKGHTGFEQPQNWLRFDEISRV 60
           MAASTHPPAVLQDRFGRRISYLR+SVTDRCDLRCSYCLPKGHTGFE+PQNWLRFDEISRV
Sbjct: 1   MAASTHPPAVLQDRFGRRISYLRISVTDRCDLRCSYCLPKGHTGFEEPQNWLRFDEISRV 60

Query: 61  VAAFARMGAGRVRLTGGEPLLRRGLATLAAQLSALPGVDELSLSTNATQLHKHAASLRAA 120
           VAAFAR+GAGRVRLTGGEPLLRRGLATLAAQLSALPGVDELSLSTNATQLHKHAASLRAA
Sbjct: 61  VAAFARLGAGRVRLTGGEPLLRRGLATLAAQLSALPGVDELSLSTNATQLHKHAASLRAA 120

Query: 121 GVQRINVSLDSLDRACSASITGRESLASVMSGLEAAKAAGFAPIKINMVLLRGVNEQEVP 180
           GVQRINVSLDSLDRACSASITGR+SLASVMSGLEAAKAAGFAPIKINMVLLRGVNEQEVP
Sbjct: 121 GVQRINVSLDSLDRACSASITGRDSLASVMSGLEAAKAAGFAPIKINMVLLRGVNEQEVP 180

Query: 181 QMAQFCFEHGFILRLIEAMPMGATGRSSPALELGPLREALVARFGLRPLAAELGGGPARY 240
           QMAQFCFEHGFILRLIE MPMGATGRSSPALELGPLREALVARFGLRPLAAELGGGPARY
Sbjct: 181 QMAQFCFEHGFILRLIETMPMGATGRSSPALELGPLREALVARFGLRPLAAELGGGPARY 240

Query: 241 WSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTIYLCLGQEERLELRPLLRAGIDDAGL 300
           WSTPDGRSTIGFISPISQHFCATCNRVRLSVDGT+YLCLGQEER ELRPLLRAGIDDAGL
Sbjct: 241 WSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTLYLCLGQEERFELRPLLRAGIDDAGL 300

Query: 301 ESAIRAAIELKPERHEFNEAPQKIVRFMSQTGG 333
           ESAIRAAIELKPERHEFNEAPQKIVRFMSQTGG
Sbjct: 301 ESAIRAAIELKPERHEFNEAPQKIVRFMSQTGG 333


>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  196 bits (497), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 181/346 (52%), Gaps = 17/346 (4%)

Query: 4   STHPPAVLQDRFGRRISYLRVSVTDRCDLRCSYCLPKG----HTGFEQPQNWLRFDEISR 59
           +  P   L D  GR +  LR+SVTDRC+ RC YC+PK        F    + L F+E++R
Sbjct: 49  AVQPTGWLSDSLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTR 108

Query: 60  VVAAFARMGAGRVRLTGGEPLLRRGLATLAAQLSALPGVDELSLSTNATQL----HKHAA 115
           V A F   G  ++RLTGGEPLLR+ + TL   L+AL   ++  +    T       + A 
Sbjct: 109 VAAQFVAHGVRKIRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQ 168

Query: 116 SLRAAGVQRINVSLDSLDRACSASITGRE-SLASVMSGLEAAKAAGFAPIKINMVLLRGV 174
           +L+ AG++R+ VSLDSLD      +   +  +A V+ G++AA AAG  P+KINMV+ +GV
Sbjct: 169 ALKDAGLKRVTVSLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGV 228

Query: 175 NEQEVPQMAQFCFEHGFILRLIEAMPMGATG--RSSPALELGPLREALVARFGLRPLAAE 232
           N+ ++  MA++      ILR IE M +G++   R    L    +   +     L      
Sbjct: 229 NDDQILPMARYFKGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVRLIATEMPLEVADPN 288

Query: 233 LGGGPARYWSTPDGRSTIGFISPISQHFCATCNRVRLSVDGTIYLCLGQEERLELRPLLR 292
             G  A  W   DG   IG IS ++Q FC  C+R RLS +G +Y CL   E  +LR ++R
Sbjct: 289 YTGETAERWRYVDGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVR 348

Query: 293 AGIDDAGLESAIRAAIELKPERHE-----FNEAPQKIVRFMSQTGG 333
           +G  DA +  AI A    + +R+        EAP + V  MS  GG
Sbjct: 349 SGGSDAEIAGAIAALWGQRGDRYSELRSALREAPLRKVE-MSYIGG 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,026,061
Number of extensions: 42229
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)