BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0056.p
         (460 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312933|ref|YP_003777025.1| nitrite/nitrate transporter pro...   927   0.0  
gi|300312932|ref|YP_003777024.1| nitrite/nitrate transporter pro...    99   5e-22

>gi|300312933|ref|YP_003777025.1| nitrite/nitrate transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/460 (100%), Positives = 460/460 (100%)

Query: 1   MNHVLQRWEPENPDFWHKQGEQIARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS 60
           MNHVLQRWEPENPDFWHKQGEQIARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS
Sbjct: 1   MNHVLQRWEPENPDFWHKQGEQIARRNLWISIPCLMLAFAVWMLWSVVAANLDKAGFHFS 60

Query: 61  KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDPTTRY 120
           KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDPTTRY
Sbjct: 61  KDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTAISTASLLIPAIGMGLALQDPTTRY 120

Query: 121 STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTPLVIA 180
           STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTPLVIA
Sbjct: 121 STLLGLALLCGLGGGNFSSSMANISFFFPKARKGYATGMNAGIGNLGVSVVQFVTPLVIA 180

Query: 181 SAMFGSAVSGQGFLFHDPKSGLESSFWLANAGFIWVPFIIAATVAAWFGMNDIASAHASL 240
           SAMFGSAVSGQGFLFHDPKSGLESSFWLANAGFIWVPFIIAATVAAWFGMNDIASAHASL
Sbjct: 181 SAMFGSAVSGQGFLFHDPKSGLESSFWLANAGFIWVPFIIAATVAAWFGMNDIASAHASL 240

Query: 241 ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA 300
           ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA
Sbjct: 241 ADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAAFAMLIKAEFPEIAVAQYAFLGPLAGALA 300

Query: 301 RPLGGMISDRVGGARVTFWVFLAMGLIILLGILPALHTHQFMLFLASFIGMFILTGLGNG 360
           RPLGGMISDRVGGARVTFWVFLAMGLIILLGILPALHTHQFMLFLASFIGMFILTGLGNG
Sbjct: 301 RPLGGMISDRVGGARVTFWVFLAMGLIILLGILPALHTHQFMLFLASFIGMFILTGLGNG 360

Query: 361 STFCMIPVIFQTERERAVQGQGEAAQQQARLDAGKESAAVLGFSGAIGAYGGFFIPQSFG 420
           STFCMIPVIFQTERERAVQGQGEAAQQQARLDAGKESAAVLGFSGAIGAYGGFFIPQSFG
Sbjct: 361 STFCMIPVIFQTERERAVQGQGEAAQQQARLDAGKESAAVLGFSGAIGAYGGFFIPQSFG 420

Query: 421 TSIKMTGAPDMAMYVFIAFYASCMAITWWYYARRNAPMPC 460
           TSIKMTGAPDMAMYVFIAFYASCMAITWWYYARRNAPMPC
Sbjct: 421 TSIKMTGAPDMAMYVFIAFYASCMAITWWYYARRNAPMPC 460


>gi|300312932|ref|YP_003777024.1| nitrite/nitrate transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 177/436 (40%), Gaps = 65/436 (14%)

Query: 37  LAFAVWMLWSVVAANLDKAGFHFSKDQLFFLTALPALSGATLRIFYSFLVPVFGGRKWTA 96
           + F +WM++ V+   +  A  H ++ +   LTA+P L+G+ +R+        +GGR    
Sbjct: 20  VCFTIWMMFGVIGIPIKNA-LHLNETEFGLLTAMPVLTGSLIRVPLGIWTDRYGGRIVFF 78

Query: 97  ISTASLLIPAIGMGLALQDPTTRYSTLLGLALLCGLGGGNFSSSMANISFFFPKARKGYA 156
           +   S +IP     + L      +   L L L  GL GG+FS     ++ +F K R+G A
Sbjct: 79  LLMLSTVIP-----IWLISYAHAFWHFLVLGLFVGLAGGSFSVGTPYVARWFKKERQGLA 133

Query: 157 TGMNAGIGNLGVSVVQFVTPLVIASAMFGSAVSGQGFLFHDPKSGLESSFWLANAGFIWV 216
            G+  G GN G +V +F+ P++IASA  G  +  Q                      ++ 
Sbjct: 134 MGVF-GAGNSGAAVNKFIAPVLIASA--GWTLVPQ----------------------VYA 168

Query: 217 PFIIAATVAAWFGM----NDIASAHASLADQAVIFKRKHNWLMCWLYVGTFGSFIGFSAA 272
             ++AA +  W G     +   S+     DQ  + +    W  C  Y   FG ++G S  
Sbjct: 169 GLMLAAALIFWLGSATDPSHQVSSDTRFMDQVRMLRDPRVWRYCQYYSVVFGGYVGLSLW 228

Query: 273 FAMLIKAE--FPEIAVAQYAFLGPLAGALARPLGGMISDRVGGARVTFWVFLAMGLIILL 330
                  E  F     A  A    L G + R LGG +SDR G  +VT+WV     +   L
Sbjct: 229 MVKYYVTEYGFDIRHAALLAACFSLPGGVLRALGGWLSDRFGAYQVTWWVMWVCWVAFFL 288

Query: 331 GILPALHTHQFMLFLASFIGMFILTGLGNGSTFC--MIPVIFQTERERAVQGQGEAAQQQ 388
              P                 F++  +G    F   + PV+F       V G   A  + 
Sbjct: 289 LSYPQTD--------------FVIQTVGGPQAFHIGLNPVLFTI--LLFVVGVAMAIGKA 332

Query: 389 ARL-----DAGKESAAVLGFSGAIGAYGGFFIPQSFGTSIKMTGAPDMAMYVFIAFYAS- 442
           +       D      AV G  G  G  GGF +P  FG ++ +TG        F+  Y + 
Sbjct: 333 SVFKFISDDYSSNIGAVSGIVGLAGGLGGFILPILFGLALDLTGVRSSC---FMLLYGTV 389

Query: 443 CMAITWWYYA-RRNAP 457
           C+++ W ++  RR  P
Sbjct: 390 CISLVWMHFQFRREYP 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,268,351
Number of extensions: 46483
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 2
Length of query: 460
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,203,190
Effective search space: 447586680
Effective search space used: 447586680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)