BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0032.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312913|ref|YP_003777005.1| LytR/AlgR family two component ...   527   e-151
gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula...    58   1e-09
gi|300311949|ref|YP_003776041.1| two component response regulato...    55   4e-09

>gi|300312913|ref|YP_003777005.1| LytR/AlgR family two component
           response regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 268

 Score =  527 bits (1357), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/268 (99%), Positives = 267/268 (99%)

Query: 1   MAVSALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMP 60
           MAVSALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMP
Sbjct: 1   MAVSALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMP 60

Query: 61  GHSGLEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQ 120
           GHSGLEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQ
Sbjct: 61  GHSGLEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQ 120

Query: 121 RLRALLAQRAARSQELHLEQALAQLRQLVSADSPVAAAPPARLEVIRAAVGNRTRLIPVE 180
           RLRALLAQRAA SQELHLEQALAQLRQLVSADSPVAAAPPARLEVIRAAVGNRTRLIPVE
Sbjct: 121 RLRALLAQRAASSQELHLEQALAQLRQLVSADSPVAAAPPARLEVIRAAVGNRTRLIPVE 180

Query: 181 EVIYFEATDKYVNVVTADGQALIRTSLRELIPQLDPGQFWQIHRGTVVQVRKVEAAVRDE 240
           EVIYFEATDKYVNVVTADGQALIRTSLRELIPQLDPGQFWQIHRGTVVQVRKVEAAVRDE
Sbjct: 181 EVIYFEATDKYVNVVTADGQALIRTSLRELIPQLDPGQFWQIHRGTVVQVRKVEAAVRDE 240

Query: 241 AGKLSLQLRGRPERLAVSRLFAPLFRQM 268
           AGKLSLQLRGRPERLAVSRLFAPLFRQM
Sbjct: 241 AGKLSLQLRGRPERLAVSRLFAPLFRQM 268


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 1   MAVSALIAEDEPLLARALQNTLQRCWPELETPRLAANGVQALEMALESLPDVLFLDIRMP 60
           MA+  L+ +D  L    ++  LQR  P+++    A +G+  ++ AL+  PDV+ +D+ MP
Sbjct: 1   MAIRILLVDDHTLFRSGIRLLLQR-HPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMP 59

Query: 61  GHSGLEVARELAEQWPQRQPFPLIVFVTAYDEHALEAFERAAIDYLLKPVNEERLGKTVQ 120
           G SGLE  + + +  P+     L V   A D     A    A  YLLK +  + L ++++
Sbjct: 60  GLSGLEAMQLIVQDLPETAVLMLSVSEEADD--LTTALHNGARGYLLKNIEADYLVQSIK 117

Query: 121 R 121
           R
Sbjct: 118 R 118


>gi|300311949|ref|YP_003776041.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score = 55.5 bits (132), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 34  LAANGVQALEMALESLPDVLFLDIRMPGHSGLEVARELAEQWPQRQPFPLIVFVTAYD-- 91
           +A +G+ ALE      PD++ LD  MPG  G E  R + +   +R     +VF+T     
Sbjct: 37  VATDGLSALERLDHITPDLILLDAMMPGIDGFETCRRIKQV--RRVAHVPVVFMTGLSET 94

Query: 92  EHALEAFERAAIDYLLKPVNEE----RLGKTVQRLRALLAQRAARSQELH 137
           EH +  FE   IDY+ KP+  +    R+G  ++  R ++  R A     H
Sbjct: 95  EHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTARMMVQARGALEHAAH 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,053
Number of extensions: 25023
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)