BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0018.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312899|ref|YP_003776991.1| transcription elongation factor...   719   0.0  

>gi|300312899|ref|YP_003776991.1| transcription elongation factor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 519

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/382 (99%), Positives = 379/382 (99%), Gaps = 3/382 (0%)

Query: 1   VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60
           VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS
Sbjct: 141 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 200

Query: 61  RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120
           RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR
Sbjct: 201 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 260

Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180
           VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI
Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 320

Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240
           GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF
Sbjct: 321 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 380

Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300
           STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL
Sbjct: 381 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 440

Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360
           DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE   RARQLIENAFEDVTDDEMKLI
Sbjct: 441 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE---RARQLIENAFEDVTDDEMKLI 497

Query: 361 DSKYDERAKALQAKAWSAVEGR 382
           DSKYDERAKALQAKAWSAVEGR
Sbjct: 498 DSKYDERAKALQAKAWSAVEGR 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,093,932
Number of extensions: 44252
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)