BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0011.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312894|ref|YP_003776986.1| LysR family transcription regul... 568 e-163 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 131 8e-32 gi|300312645|ref|YP_003776737.1| LysR family transcription regul... 128 6e-31 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 122 4e-29 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 121 5e-29 >gi|300312894|ref|YP_003776986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 568 bits (1463), Expect = e-163, Method: Compositional matrix adjust. Identities = 283/288 (98%), Positives = 284/288 (98%) Query: 1 MAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVALFERIGNRVRLLPHGQRYAS 60 MAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGV LFERIGNRVRLLPHGQRYAS Sbjct: 12 MAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVTLFERIGNRVRLLPHGQRYAS 71 Query: 61 HVRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHLCER 120 HVRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHL ER Sbjct: 72 HVRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHLSER 131 Query: 121 MEPFLLPGSGLNAAIHFLHPDWTGMQTYPLLDEVLVPVCHPALVAGTSGVPALDALPRLH 180 MEPFLLPGSGL+AAIHFLHP WTGMQTY LLDEVLVPVCHPALVAGTSGVPALDALPRLH Sbjct: 132 MEPFLLPGSGLDAAIHFLHPAWTGMQTYSLLDEVLVPVCHPALVAGTSGVPALDALPRLH 191 Query: 181 RRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETELAQGR 240 RRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETELAQGR Sbjct: 192 RRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETELAQGR 251 Query: 241 LVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWILEESSPLAGLE 288 LVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWILEESSPLAGLE Sbjct: 252 LVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWILEESSPLAGLE 299 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 131 bits (329), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/284 (34%), Positives = 143/284 (50%), Gaps = 13/284 (4%) Query: 2 AFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVALFERIGNRVRLLPHGQRYASH 61 AF AAARH SF AA EL +T GAISRQI LEG+LG+ LFER +V L G+++ Sbjct: 13 AFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLTERGRQFFEE 72 Query: 62 VRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHLCERM 121 LE L ++ +M P ++ I V P+FA+RWLIP L F +P I + Sbjct: 73 ASPALEILANAARRVMRDAPT-RTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQVVTST 131 Query: 122 EPFLLPGSGLNAAIHFLHPDW-TGMQTYPLLDEVLVPVCHPALVAG-----TSGVPALDA 175 GS + A+ +W ++ +++ LV V PAL+ SG+ Sbjct: 132 ATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPLEDVSGLARHTV 191 Query: 176 LPRLHRRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETE 235 L RR + + W++ A G+ S S +D +++A + GLGVAL P + + Sbjct: 192 LLSRSRRNDWEDWRKLA---GLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVSLADND 248 Query: 236 LAQGRLVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWILE 279 L GRLV P+P D R++ L Q GSE + FA+W+ E Sbjct: 249 LRSGRLVCPFP-DLRLTLA-PYYLGINAQAGSEA-QLFARWLAE 289 >gi|300312645|ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 137/279 (49%), Gaps = 11/279 (3%) Query: 2 AFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVALFERIGNRVRLLPHGQRYASH 61 AFE +ARH SF RAAEEL++T+ A+S Q+ LE LGVALF R+ + L G Sbjct: 10 AFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEGLALLPV 69 Query: 62 VRETLERLDRDSQHLMSQPPNGAS---LDIAVSPTFAMRWLIPRLPRFAALHPHITVHLC 118 V ++ R+ +++Q +G L + V TFA+ WL+PRL +F HP + + L Sbjct: 70 VAQSFGRI----ADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLRLL 125 Query: 119 ERMEPFLLPGSGLNAAIHFLHPDWTGMQTYPLLDEVLVPVCHPALVAGTSGVPALDALPR 178 L G GL+ AI F W G Q L + L P+C PA+ A PA Sbjct: 126 TNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRS-PADLGAET 184 Query: 179 LHRRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETELAQ 238 L R D W R+ A G + +G +D L EAA GVAL+P L E EL Q Sbjct: 185 LLRSYRSDEWGRWFAAAGAACP-PLRGFVFDSSLALAEAAAQEAGVALLPVLMFERELQQ 243 Query: 239 GRLVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWI 277 GRLV P+ Q + + L Q + + AF QW+ Sbjct: 244 GRLVCPFGQRIVLGAYWLTSLKSRPQ--TAAMAAFRQWL 280 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 122 bits (305), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 23/281 (8%) Query: 12 FARAAEELALTEGAISRQISRLEGFLGVALFERIGNRVRLLPHGQRYASHVRETLERLDR 71 F+RAAEE+ +T GAIS Q+ LE LG+ LF R G R+ + GQR+A+ +R++L + Sbjct: 25 FSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISITETGQRFAATIRKSLSEIAL 84 Query: 72 DSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHLCERMEPFLLPGSGL 131 ++HL SQ L I+ +P+FA RWL PRL RF HP + V L L G+ Sbjct: 85 AAEHLRSQNRQ-QRLVISTTPSFASRWLAPRLWRFIDAHPELEVVLQSAAHLNDLRLDGI 143 Query: 132 NAAIHFLHPDWTGMQTYPLLDEVLVPVCHPALVAGTS---GVPALDALPRLHRRQNHDAW 188 + + F +++G+ + L D+ PV P S PA A L R + ++W Sbjct: 144 DVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLARPADLAHCSLLRVDSRESW 203 Query: 189 QRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVETELAQGRLVAPWPQD 248 Q + A+ G+ L G + + + A G GVAL + E++ G LV Sbjct: 204 QPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEGKGVALARHVIASQEISTGELV------ 257 Query: 249 SRISKTFCLVLPE---------PLQLGSEPLKAFAQWILEE 280 + F +V+P P L + AF +WI EE Sbjct: 258 ----RLFDVVVPSEDAHYFVHLPEALEKPGVAAFKEWIFEE 294 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 121 bits (304), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 138/289 (47%), Gaps = 13/289 (4%) Query: 1 MAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVALFERIGNRVRLLPHGQRYAS 60 +AFEAA RHGSF RAA EL LT+ AISRQI++LE FLG LF R +RL GQRYA+ Sbjct: 13 IAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTVSGQRYAA 72 Query: 61 HVRETLERLDRDSQHLMSQPPNGASLDIAVSPTFAMRWLIPRLPRFAALHPHITVHLCER 120 V+ L ++ +M + + L +A S A+ WL PRL RF A HP + L Sbjct: 73 LVQRLLVDCAEATEDIMKRKGH-QELTVACSQGVAVLWLTPRLARFRARHPDCHLRLVVN 131 Query: 121 MEPFLLPGSGLNAAIHFLHPD-WTGMQTYPLLDEVLVPVCHPALVAGTSGVPAL---DAL 176 L + + I+FL G+ L DE + PVC P + G P L Sbjct: 132 DSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLDGRLLAPEDLRHQTL 191 Query: 177 PRLHRRQNH-DAWQRYAAQTG---ISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYV 232 L Q +WQ + A G + + H +Y + L++ A+ G GV L R + Sbjct: 192 LTLEDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPV---LLQLAMEGQGVVLAWRHMI 248 Query: 233 ETELAQGRLVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWILEES 281 + + QG LV + + + V P ++ +AF W++ ES Sbjct: 249 DACMEQGLLVRACQASASLGGGYYAVWPRD-RIEHAAARAFRSWLVAES 296 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 933,233 Number of extensions: 40663 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 28 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)