BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0008.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase dom...   555   e-159
gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase [Herbasp...   163   1e-41

>gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase domain
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  555 bits (1431), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/276 (98%), Positives = 273/276 (98%)

Query: 1   MHFPTKQIGDFSVTAISDGFLSAPLELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRS 60
           MHFPTKQIGDFSVTAISDGFLSAPLELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRS
Sbjct: 1   MHFPTKQIGDFSVTAISDGFLSAPLELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRS 60

Query: 61  PTQTVLVDAGAGGFKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAF 120
           PTQTVLVDAGAGGFKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAF
Sbjct: 61  PTQTVLVDAGAGGFKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAF 120

Query: 121 PDAELVVQGQELDFWENDANFCRASERARGNFIFARRVFVKYRYRLRTFAGGEVLPGISA 180
           PDAELVVQGQELDFWENDANFCRASERARGNFIFARRVFVKYR RLRTFAGGEVLPGISA
Sbjct: 121 PDAELVVQGQELDFWENDANFCRASERARGNFIFARRVFVKYRDRLRTFAGGEVLPGISA 180

Query: 181 QPLPGHTAGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLL 240
           Q LPGHT GHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLL
Sbjct: 181 QLLPGHTDGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLL 240

Query: 241 DMVSADQLLIAGMHLGEEGFVQIVRTGKSYRVVGKR 276
           DMVSADQLLIAGMHLGEEGFVQIVRTGKSYRVVGKR
Sbjct: 241 DMVSADQLLIAGMHLGEEGFVQIVRTGKSYRVVGKR 276


>gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 143/268 (53%), Gaps = 6/268 (2%)

Query: 8   IGDFSVTAISDGFLSAPL-ELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRSPTQTVL 66
           +GDF VT ++DG    P  +++  +D    T     AG        IN +LI +  + +L
Sbjct: 49  VGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERRIL 108

Query: 67  VDAGAGG-FKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAFPDAEL 125
           +D+GAG  F    G L + LK AG  P+ ID VLLTH H DH  GL    G+R FP+A++
Sbjct: 109 IDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARD-GERQFPNADV 167

Query: 126 VVQGQELDFWENDANFCRASERARGNFIFARRVFVKYRY--RLRTFAGGEVL-PGISAQP 182
            +   ELD+W +D+   +A    +  F+  R     Y    R+RTF+G   L PGI A P
Sbjct: 168 FLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAIP 227

Query: 183 LPGHTAGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLLDM 242
            PGHT GH  Y I S G+ + + GDI+H   +Q+  P+V++ FD D   A  TR+  L+ 
Sbjct: 228 APGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALEA 287

Query: 243 VSADQLLIAGMHLGEEGFVQIVRTGKSY 270
           ++    L+AG HL   G   I+R G  +
Sbjct: 288 LAQSHELVAGPHLSFPGLGHILRAGDGF 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 976,363
Number of extensions: 44188
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)