BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0004.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312886|ref|YP_003776978.1| acetyltransferase [Herbaspirill...   720   0.0  
gi|300310014|ref|YP_003774106.1| o-antigen acetylase [Herbaspiri...    57   3e-09

>gi|300312886|ref|YP_003776978.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 364

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/364 (99%), Positives = 362/364 (99%)

Query: 1   MSVAQRNARIDVLRGVSILLVLFHHFNIAYPLKDTVPATIFATPVVQAIARNGNYGVTIF 60
           MS+AQRNARIDVLRGVSILLVLFHHFNIAYPLKDTVPATIFATPVVQAIARNGNYGVTIF
Sbjct: 1   MSIAQRNARIDVLRGVSILLVLFHHFNIAYPLKDTVPATIFATPVVQAIARNGNYGVTIF 60

Query: 61  FVISGYLMTANTLRRWGRLDAIDARRFYALRAWRILPCMFLLLAMVSLLAALGGTLFQNR 120
           FVISGYLMTANTLRRWGRLDAIDARRFYALRAWRILPCMFLLLAMVSLLAALGGTLFQNR
Sbjct: 61  FVISGYLMTANTLRRWGRLDAIDARRFYALRAWRILPCMFLLLAMVSLLAALGGTLFQNR 120

Query: 121 GFGEPPLPMWMTALASLTFWMNVLIAQHGWVNYPLGVLWSLSVEGVFYLAFPVVCLTLRR 180
           GFGEPPLPMWMTALASLTFWMNVLIAQHGWVNYPLGVLWSLSVEGVFYLAFPVVCLTLRR
Sbjct: 121 GFGEPPLPMWMTALASLTFWMNVLIAQHGWVNYPLGVLWSLSVEGVFYLAFPVVCLTLRR 180

Query: 181 PRFIGAFCLLFIVAGPLYRLAHQGDEGGFLYAYLACFDGIAIGCCTAILVARGTHPWIST 240
           P FIGAFCLLFIVAGPLYRLAHQGDEGGFLYAYLACFDGIAIGCCTAILVARGTHPWIST
Sbjct: 181 PLFIGAFCLLFIVAGPLYRLAHQGDEGGFLYAYLACFDGIAIGCCTAILVARGTHPWIST 240

Query: 241 RWLQCMTILAMALLYLCWPISRSNVLGVTAMALGTALLLAGASGKTVAARSAGYSFLAFC 300
           RWLQCMTILAMALLYLCWPISRSNVLGVTAMALGTALLLAGASGKTVAARSAGYSFLAFC
Sbjct: 241 RWLQCMTILAMALLYLCWPISRSNVLGVTAMALGTALLLAGASGKTVAARSAGYSFLAFC 300

Query: 301 GGLSYEIYLFHLIVLGLMRTAIPPITASSEVKLGLLAGYLICSLGVACAVARFFSRPFNR 360
           GGLSYEIYLFHLIVLGLMRTAIPPITASSEVKLGLLAGYLICSLGVACAVARFFSRPFN 
Sbjct: 301 GGLSYEIYLFHLIVLGLMRTAIPPITASSEVKLGLLAGYLICSLGVACAVARFFSRPFNP 360

Query: 361 LARE 364
           LARE
Sbjct: 361 LARE 364


>gi|300310014|ref|YP_003774106.1| o-antigen acetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 681

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 39/182 (21%)

Query: 10  IDVLRGVSIL-LVLFHHFNIAYPLKDTVPATIFATPVVQAIARNGNYGVTIFFVISGYLM 68
           ID LR ++I+ +V+FH F  A P                     G  GV IFFVISG+L+
Sbjct: 36  IDGLRAIAIVSVVVFHAFPDAMP--------------------GGFIGVDIFFVISGFLI 75

Query: 69  TANTLRR--WGRLDAIDARRFYALRAWRILPCMFLLLAMVSLLAALGGTLFQNRGFGEPP 126
           ++   R+   GR    D   FY  R  RI P + L+LA   +L        + R  G+  
Sbjct: 76  SSIIFRQLDQGRFSFTD---FYVHRIRRIFPALILVLASCFVLGWFSLLPEEYRQLGK-- 130

Query: 127 LPMWMTALASLTFWMN-VLIAQHGWVN-----YPLGVLWSLSVEGVFYLAFPVVCLTLRR 180
                   A   F  N VL  + G+ +      PL  LWSLSVE  FYL +P++   L R
Sbjct: 131 -----HMAAGAGFIQNLVLWKESGYFDVESDMKPLLHLWSLSVEEQFYLVYPLLVCGLWR 185

Query: 181 PR 182
            R
Sbjct: 186 AR 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.144    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,073,292
Number of extensions: 42658
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 131 (55.1 bits)