BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0001.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310211|ref|YP_003774303.1| bacteriophage replication A pro...   294   4e-81
gi|300311674|ref|YP_003775766.1| bacteriophage replication prote...    59   4e-10

>gi|300310211|ref|YP_003774303.1| bacteriophage replication A
           protein [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  294 bits (753), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 146/157 (92%)

Query: 92  GRYEECERVMPYGVQCRQMVGVVFKSIRHTWTPVQGHDARASAGSGFPWTRVNNCTQPAG 151
           GRYEE ERVMPYGVQCRQM GVVFKS+RHTW P+QG +ARASAG GFPWTRVNNCTQPA 
Sbjct: 504 GRYEERERVMPYGVQCRQMAGVVFKSVRHTWIPIQGTEARASAGLGFPWTRVNNCTQPAV 563

Query: 152 ADFAADVSFEPKTAPAPVMFKPDQAAQIDHAWLALGACPWPRPVVDDRLAWPAPDMTADE 211
             FAADVSF+PKTAPAPVMFKPDQAAQIDHAWLALGACPWPRP VDDR AWPAPDMTA+E
Sbjct: 564 TGFAADVSFDPKTAPAPVMFKPDQAAQIDHAWLALGACPWPRPAVDDRPAWPAPDMTAEE 623

Query: 212 QRRALADWDAIKACPWPRMAPVPDSSPRHGTPRQVAD 248
           QRRALADWDAIKACPWPRMAPVPD SPR+GTPRQVAD
Sbjct: 624 QRRALADWDAIKACPWPRMAPVPDKSPRYGTPRQVAD 660



 Score =  119 bits (298), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 64/90 (71%), Gaps = 25/90 (27%)

Query: 1   MTALARSALARRGIGLYGFRIAEPHHDGCPHWHMLCRGIGLYGFRIAEPHHDGCPHWHML 60
           +TALARSALARRGIGL                         YGFRIAEPHHDGCPHWHML
Sbjct: 283 VTALARSALARRGIGL-------------------------YGFRIAEPHHDGCPHWHML 317

Query: 61  VFVRALPDYTTPHVKDVASRAIRVMKRYAW 90
           VFVRALP YTTPHVKDVASRAIRVMKRYAW
Sbjct: 318 VFVRALPGYTTPHVKDVASRAIRVMKRYAW 347


>gi|300311674|ref|YP_003775766.1| bacteriophage replication protein
           [Herbaspirillum seropedicae SmR1]
          Length = 592

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 10/48 (20%)

Query: 42  YGFRIAEPHHDGCPHWHMLVFVRALPDYTTPHVKDVASRAIRVMKRYA 89
           YGFRIAEPHHDGCPHWHML+F+           KD A   I  MK YA
Sbjct: 282 YGFRIAEPHHDGCPHWHMLLFI----------AKDDAQVFIDTMKEYA 319



 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/30 (76%), Positives = 26/30 (86%)

Query: 6   RSALARRGIGLYGFRIAEPHHDGCPHWHML 35
           R+A AR+ +  YGFRIAEPHHDGCPHWHML
Sbjct: 271 RAAYARQDVQPYGFRIAEPHHDGCPHWHML 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 923,074
Number of extensions: 41803
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)