BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0542.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310357|ref|YP_003774449.1| DeoR family transcription repre...   501   e-143
gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon re...    85   6e-18

>gi|300310357|ref|YP_003774449.1| DeoR family transcription
           repressor protein [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  501 bits (1290), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 60
           MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID
Sbjct: 28  MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 87

Query: 61  READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 120
           READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI
Sbjct: 88  READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 147

Query: 121 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 180
           VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE
Sbjct: 148 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 207

Query: 181 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 240
           VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE
Sbjct: 208 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 267

Query: 241 VVAG 244
           VVAG
Sbjct: 268 VVAG 271


>gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon
           repressor transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 268

 Score = 84.7 bits (208), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 7/243 (2%)

Query: 3   EMIRDHGPTPLSRIADVLGVTVMTVRRDL-AGEDSPLICL--GGHVLEASPGGSENRYSI 59
           E +R HG   +  +A  L VT  TVRRD+ A  D+ L+    GG  L +S   +EN    
Sbjct: 27  ECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSS---TENIAYP 83

Query: 60  DREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIAN 119
            R+   HA+ KR   +  A RV +G SL ++ GTT   +A AL     L V+  +LN+AN
Sbjct: 84  QRQV-MHAEAKRRIGRTVAARVPDGCSLILNLGTTTEEVALALQQHKNLHVVTNNLNVAN 142

Query: 120 IVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFH 179
            ++  P  +VI+ GG+          E  + ++++  V+   +    ++    +   +  
Sbjct: 143 SLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLRDFDAR 202

Query: 180 EVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPL 239
           EV + Q  IE + Q ++V D SK GR      + L     +     P  +   L ++  +
Sbjct: 203 EVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLLAETDV 262

Query: 240 EVV 242
           EVV
Sbjct: 263 EVV 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,245
Number of extensions: 31861
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)