BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0539.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310359|ref|YP_003774451.1| regulator protein PecM [Herbasp...   497   e-142

>gi|300310359|ref|YP_003774451.1| regulator protein PecM
           [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  497 bits (1279), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/277 (97%), Positives = 271/277 (97%)

Query: 1   MLTAIAPAIWGSTYIVTSQLLPPDRPFTAALIRCLPAGLLLLLMTRRLPARADWWRLLVL 60
           MLTAIAPAIWGSTYIVTSQLLPPDRPFTAALIRCLPAGLLLLLMTRRLPARADWWRLLVL
Sbjct: 14  MLTAIAPAIWGSTYIVTSQLLPPDRPFTAALIRCLPAGLLLLLMTRRLPARADWWRLLVL 73

Query: 61  SAFNIGLFQALLFVAAYRLPGGLAAVLGAIQPLLVMVLAWAVDGRAPAQITLWAAVAGVA 120
            AFNIGLFQALLFVAAYRLPGGLAAVLGAIQPLLVMVLAWAVDGRAPAQITLWAAVAGVA
Sbjct: 74  GAFNIGLFQALLFVAAYRLPGGLAAVLGAIQPLLVMVLAWAVDGRAPAQITLWAAVAGVA 133

Query: 121 GMAVLLLSPQTRIEPIGVAAALAGAGCMAAGVWLTRRWQLRLPVLALTGWQLTIGGLMLA 180
           GMAVLLLSPQTRIEPIGVAAALAG GCMAAGVWLTRRWQLRLPVLALTGWQLTIGGLMLA
Sbjct: 134 GMAVLLLSPQTRIEPIGVAAALAGTGCMAAGVWLTRRWQLRLPVLALTGWQLTIGGLMLA 193

Query: 181 PAAWLVDAPLPSLGLTQELAYAYLSLAGALLAYALWFRGIARLPTVAVASLGLLSPLTAV 240
           PAAWLVDAPLPSLGLTQELAYAYLSLAGALLAYALWFRGI RLPTVAVASLGLLSPLTAV
Sbjct: 194 PAAWLVDAPLPSLGLTQELAYAYLSLAGALLAYALWFRGIGRLPTVAVASLGLLSPLTAV 253

Query: 241 VLGWVILSQSISGIALAGLVVVLGSVFAVQWSATRRT 277
           VLGWVILSQSISGIALAGLVVVLGSVFAVQW+A R  
Sbjct: 254 VLGWVILSQSISGIALAGLVVVLGSVFAVQWTAARTN 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,843
Number of extensions: 21623
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 5
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)