BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0537.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...   694   0.0  
gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...   109   5e-25

>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/367 (99%), Positives = 365/367 (99%)

Query: 1   MAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSA 60
           MAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSA
Sbjct: 24  MAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSA 83

Query: 61  RALRQVGILYAATLRLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIM 120
           RALRQVGILYAATL LIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIM
Sbjct: 84  RALRQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIM 143

Query: 121 STLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALPDEVRDSAATPH 180
           STLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALPDEV DSAATPH
Sbjct: 144 STLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALPDEVHDSAATPH 203

Query: 181 GADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPLAWVSYSYAAFSTGMAAG 240
           GADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSP+AWVSYSYAAFSTGMAAG
Sbjct: 204 GADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPMAWVSYSYAAFSTGMAAG 263

Query: 241 RLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANLMPIFFL 300
           RLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANLMPIFFL
Sbjct: 264 RLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANLMPIFFL 323

Query: 301 AAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLRLSFVGVALVMTVVALFGG 360
           AAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLRLSFVGVALVMTVVALFGG
Sbjct: 324 AAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLRLSFVGVALVMTVVALFGG 383

Query: 361 KAVRRFI 367
           KAVRRFI
Sbjct: 384 KAVRRFI 390


>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 170/346 (49%), Gaps = 21/346 (6%)

Query: 4   FFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSARAL 63
           F + G  F+TW   IP+++++  L  A L+L +L    GA+ +   +       G+  + 
Sbjct: 41  FLLLGVVFSTWAARIPAIRDQLQLDAATLALVLLCGGIGAVGSFPLAAWITGHYGARHSS 100

Query: 64  RQVGILYAATLRLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAALVEGQRTRPIMSTL 123
              G++   +L L+ LAP  W L+ +  ++G+A + FDVA++   A  E +  RPIMS L
Sbjct: 101 LYAGLVLLLSLPLLALAPGLWTLMAVCTLYGAASSCFDVAINALGAQAEREAGRPIMSML 160

Query: 124 HAMFSIGGIAGAAL-GAVPGL--SPLAHAALVGVVTLAVSLSIGPFALPDE------VRD 174
           H  F +G  +GA +  AV GL  +PL H  L     LA  L  G  ALPD+       R 
Sbjct: 161 HGWFCVGTFSGALVASAVAGLGVAPLWHFLLA-AALLAWPLYAGCQALPDDRPQYDPQRQ 219

Query: 175 SAATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPLAWVSYSYAAFS 234
             A PHG        ++VLG IAF   + EG + DW+ +YM+D   +       +YAAF+
Sbjct: 220 LFALPHG-------HLVVLGVIAFCGAIVEGSVADWSGIYMKDHIGASDGATPLAYAAFA 272

Query: 235 TGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGLGIANL 294
             M   R+ GD ++AR    R ++        G+ALA         + G  ++G G+A +
Sbjct: 273 GMMLVMRMVGDGLKARYDARRVVSIGTLVATGGMALAVTAQGMTPAILGFAIAGAGVAAV 332

Query: 295 MPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLG 340
            P  F AA R      + ++AAVA   Y G L+GP   G +A   G
Sbjct: 333 FPFVFSAAGR----HGSTALAAVATLGYSGSLIGPPVFGFLAHGWG 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,342
Number of extensions: 33725
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)