BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0520.p (313 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310375|ref|YP_003774467.1| LysR family transcription regul... 635 0.0 gi|300313164|ref|YP_003777256.1| LysR family transcription regul... 184 9e-48 gi|300310701|ref|YP_003774793.1| LysR family transcription regul... 173 2e-44 gi|300309487|ref|YP_003773579.1| LysR family transcription regul... 144 7e-36 gi|300310484|ref|YP_003774576.1| LysR family transcription regul... 98 7e-22 >gi|300310375|ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/313 (100%), Positives = 313/313 (100%) Query: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVAL 60 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVAL Sbjct: 1 MKNSDPNWFLRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVAL 60 Query: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLP 120 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLP Sbjct: 61 FERLPRGMRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLP 120 Query: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPI 180 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPI Sbjct: 121 PAIARVKEQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPI 180 Query: 181 CAVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 CAVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI Sbjct: 181 CAVARVGHPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAI 240 Query: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL Sbjct: 241 LFITSLLQQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANL 300 Query: 301 VLQAIREVAKMIY 313 VLQAIREVAKMIY Sbjct: 301 VLQAIREVAKMIY 313 >gi|300313164|ref|YP_003777256.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 184 bits (466), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 172/296 (58%), Gaps = 1/296 (0%) Query: 12 ARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPT 71 +RL+ RQ+ LL ALD+ ++H+AA ++MTQPAA+K L ++ED LGV LF+R PRG+ T Sbjct: 28 SRLRFRQVALLTALDEQGSLHKAAEVMHMTQPAATKALHEMEDALGVTLFDRSPRGIEAT 87 Query: 72 IYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQAP 131 G +IR+AR+ + ++ +++ + SG G++ +G I+ A + A++R++E P Sbjct: 88 ELGRCVIRYARLIQSDVANLRDELQNMISGRGGRLAIGTIMGAA-PFVTRALSRLREIQP 146 Query: 132 MLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVGHPFH 191 + I + ++S L L G +D +IGR YE L EP+C V+ + HP Sbjct: 147 EVSIEISEDTSARQLLLLDQGRIDLMIGRSSVSSQPNLYHYEMLRGEPMCIVSGIDHPLA 206 Query: 192 ARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQTD 251 + L +LA +WI+ +R + F+ +G+ P NV++T + +LL Q++ Sbjct: 207 TAQKVRLQELAEASWILYSSNMPMRIWIEHEFKLEGVKVPGNVIETASPFVTITLLAQSN 266 Query: 252 FIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 + MP ++A ++ +++ ILP+ L R+ +GI+TR++ LS A + +Q +R+ Sbjct: 267 MVAVMPLDIAHFFAAKQMLGILPVNLKTRIEHYGIVTRKNTTLSSLAKMFIQILRQ 322 >gi|300310701|ref|YP_003774793.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 1/299 (0%) Query: 10 LRARLKTRQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMR 69 L +RL+ +QL LLIALD+ +++H+A+S L MTQ AASK L +LE ML LFER G+ Sbjct: 20 LLSRLRMKQLQLLIALDEHKSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLI 79 Query: 70 PTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQ 129 +G +IR+AR+ T L E++ ++SG G++ +G ++ AL+ PA+ ++ + Sbjct: 80 ANPFGHCVIRYARLMATDLGSLCEEMAQIRSGQGGRLAIGAVMGAVPALIVPAVDALQRR 139 Query: 130 APMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVGHP 189 P L I + ++S +L L G LD ++ R G Y+ L++EP+ V HP Sbjct: 140 HPALSIEIVEDTSLHMLDLLDEGHLDLLVARASVSAHPGKYHYQSLSEEPLSVVVSAEHP 199 Query: 190 FHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQ 249 +L LA LA WI P L A ++ GL+ P+N + T + +LLQQ Sbjct: 200 RPRGKELQLAALAGYRWITYPSHMPLHAVLEREMDLAGLSMPANTIATASTFVTVALLQQ 259 Query: 250 -TDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 D + +PT VA + Q ++ ILP++L GI+TR+ LS +Q +RE Sbjct: 260 GADMVSILPTAVAEMFVQRGMLRILPVKLRSMSQTIGIVTRKGGQLSGAGQAFVQLLRE 318 >gi|300309487|ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 144 bits (364), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 155/283 (54%), Gaps = 6/283 (2%) Query: 23 IALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPTIYGEAMIRHAR 82 IAL D ++ +AA ++ +TQP ASK L+++E LGV LF R RG+ PT G +IR+AR Sbjct: 24 IALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQLFTRTNRGLEPTELGHCVIRYAR 83 Query: 83 MALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQAPMLRIGVEVESS 142 + T L+ E+++A+ G G++ VG I+ A+ LL A+ R+ E P L + + ++S Sbjct: 84 LIQTDLTHLREEMLAIMQGHGGRLAVGTIMG-AVPLLTDALTRLLEAHPALSVEIVEDTS 142 Query: 143 NILLSRLLHGELDFIIGRILDDEARGGLLYE--ELADEPICAVARVGHPFHARTDLSLAD 200 LL L G LD I R + LY+ + +E + VA V HP L LAD Sbjct: 143 ARLLRLLDQGRLDLAICRTSISQRPD--LYDAFNIHEEELAVVASVQHPLADAPSLQLAD 200 Query: 201 LASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQT-DFIYAMPTE 259 LA W++ +R ++ F + L P ++++TT+ SLLQ+ F+ + + Sbjct: 201 LADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLSLLQKNPHFVALLSVD 260 Query: 260 VARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVL 302 VA++ T+ + ILP+ L R + ++TR+ +LSP A L L Sbjct: 261 VAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVARLFL 303 >gi|300310484|ref|YP_003774576.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 98.2 bits (243), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 139/294 (47%), Gaps = 17/294 (5%) Query: 17 RQLLLLIALDDTRNIHRAASELNMTQPAASKQLKDLEDMLGVALFERLPRGMRPTIYGEA 76 +QL + A+ ++ RAA+ LN+TQPA S+ +K LE+ +G ALFER +GM T+ G+A Sbjct: 6 QQLEMFNAIVSAGSLGRAAALLNLTQPALSRAIKRLEESVGGALFERHTKGMHLTVLGQA 65 Query: 77 MIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVKEQAPMLRIG 136 ++ HA +A E++ A++ G + VG + S A +LP A+ V ++ P LR+ Sbjct: 66 LLPHAMSLQREAQQAREELDAIRGLAKGVIKVGAVGSIASLVLPLAVRGVLDKWPNLRVE 125 Query: 137 VEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPIC------AVARVGHPF 190 + + L+ LL E+D + GG A C VA HP Sbjct: 126 IIEGVWDRLVEGLLTHEIDLAL------STSGGQTEGVAAIADCCWTDLSYVVAAPDHPL 179 Query: 191 HARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLLQQT 250 + ++L + W + PKG+ + F GL P V++ ++ + SL+ + Sbjct: 180 RQQGRIALEQTLGQRWALTPKGTGPYLHVQETFARHGLPMPEIAVESRSVTVLKSLVARC 239 Query: 251 DFIYAMPTEVARYYTQARL---MDILPIELPCRMAGFGIITRQDNLLSPGANLV 301 FI M + QA + +++ ++ P + F RQ L +P A L+ Sbjct: 240 GFIGWMSGPMFDTERQAGVIVALEVAGLDAPRTLTAF--RRRQGILPAPAARLL 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 942,660 Number of extensions: 38394 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 41 Length of query: 313 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 228 Effective length of database: 1,217,395 Effective search space: 277566060 Effective search space used: 277566060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)