BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0506.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310386|ref|YP_003774478.1| TetR family transcription regul...   417   e-118

>gi|300310386|ref|YP_003774478.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/206 (99%), Positives = 205/206 (99%)

Query: 1   MSIFGKLSFKDQAFKLRENAILDAATAVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60
           MSIFGKLSFKDQAFKLRENAILDAAT+VLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK
Sbjct: 1   MSIFGKLSFKDQAFKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60

Query: 61  EELIGETMIRLIDGAIDQLAQLEHIAGARDKLEAMLEWALRVRLEGGLPFLPSTSAPVRD 120
           EELIGETMIRLIDGAIDQLAQLEHIAGARDKLEAMLEWALRVRLEGGLPFLPSTSAPVRD
Sbjct: 61  EELIGETMIRLIDGAIDQLAQLEHIAGARDKLEAMLEWALRVRLEGGLPFLPSTSAPVRD 120

Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKEAQKAGELDAALPSDVVLYSYYARTCDPAVDYLQKF 180
           MLMRNVKYVMRVLKLNGQLEKLVKEAQKAGELDAALPSDVVLYSYYARTCDPAVDYLQKF
Sbjct: 121 MLMRNVKYVMRVLKLNGQLEKLVKEAQKAGELDAALPSDVVLYSYYARTCDPAVDYLQKF 180

Query: 181 SKMSNEDIIKYMLHVAFKGFEQDAPR 206
           SKM NEDIIKYMLHVAFKGFEQDAPR
Sbjct: 181 SKMGNEDIIKYMLHVAFKGFEQDAPR 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 615,117
Number of extensions: 24160
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)