BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0497.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310394|ref|YP_003774486.1| AraC family transcription regul... 612 e-177 gi|300312695|ref|YP_003776787.1| AraC family transcription regul... 286 1e-78 gi|300313268|ref|YP_003777360.1| transcription regulator protein... 63 3e-11 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 57 2e-09 >gi|300310394|ref|YP_003774486.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 612 bits (1579), Expect = e-177, Method: Compositional matrix adjust. Identities = 294/294 (100%), Positives = 294/294 (100%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG Sbjct: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 Query: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG Sbjct: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 Query: 121 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS 180 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS Sbjct: 121 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL 240 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL Sbjct: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL 240 Query: 241 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASNGLFAATG 294 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASNGLFAATG Sbjct: 241 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASNGLFAATG 294 >gi|300312695|ref|YP_003776787.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 131/282 (46%), Positives = 189/282 (67%), Gaps = 1/282 (0%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 M PDLELVH R+ +SF AW+H YP +WH+HPEYE+H++ A+SG+F+VGD IGDF PG Sbjct: 1 MSPDLELVHTRQDQSFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG 60 Query: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 LV+TGPNLP NW+S++ A + VP R LV+QF ++ +I E+ + +L+ + RG Sbjct: 61 NLVLTGPNLPHNWVSNLGAHQQVPARDLVLQFSRPFAERVVGAIPELSPLQEMLDGAARG 120 Query: 121 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS 180 L F A ++ PLMQ L G +R+ L +L+ LA+ PE + LA Y L+ S Sbjct: 121 LQFPDALGASITPLMQELAQASGARRVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMS 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL 240 S LN+ ++ +R++L ++ E DLA++ G ++SSF+R FKRHTG T ++Y+N LR++ AC Sbjct: 181 STLNQVLSCIRQNLGGNLRETDLAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEAC- 239 Query: 241 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRN 282 LL + +T++CY GF+NLSNFNR F KGM PS FR+ Sbjct: 240 ELLMCTELSVTEVCYRVGFNNLSNFNRQFLASKGMPPSRFRS 281 >gi|300313268|ref|YP_003777360.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 49/101 (48%) Query: 183 LNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACLAL 242 R + ++ HL + + LA++ + F R F TG + RY +R+ A L L Sbjct: 13 FERVLDHIEAHLHAPLEVEQLANVAHFSRFHFQRQFADFTGVGVARYILLMRLKHASLQL 72 Query: 243 LTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNT 283 +PQ RI DI E GF N +F R F G SPS+FR Sbjct: 73 AFQPQRRIIDIALEAGFENPESFTRAFRSAFGQSPSQFRRA 113 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 180 SSGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLAC 239 S + +A+ +L EH++ I + AD V + +F R FKR TG T + ++R++ AC Sbjct: 252 SERIQKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAAC 311 Query: 240 LALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRN 282 L L I I G + + R F K G+SP E+R Sbjct: 312 L-YLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRK 353 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 943,195 Number of extensions: 38765 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 4 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)