BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0446.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subun...   454   e-129
gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate ...    73   2e-14
gi|300309646|ref|YP_003773738.1| transketolase C-terminal subuni...    62   5e-11

>gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score =  454 bits (1167), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   VIAEENLNVKICCALPGLTTGYGPSHQATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIA 60
           VIAEENLNVKICCALPGLTTGYGPSHQATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIA
Sbjct: 114 VIAEENLNVKICCALPGLTTGYGPSHQATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIA 173

Query: 61  AHQGPVYMRLARGNVPLVLDEYDYRFELGRAKEIRDGNDVLIISSGFMTMRALEVAKALE 120
           AHQGPVYMRLARGNVPLVLDEYDYRFELGRAKEIRDGNDVLIISSGFMTMRALEVAKALE
Sbjct: 174 AHQGPVYMRLARGNVPLVLDEYDYRFELGRAKEIRDGNDVLIISSGFMTMRALEVAKALE 233

Query: 121 ADKLSVAVLHCPTIKPFDEATVVAQVKKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQP 180
           ADK+SVAVLHCPTIKPFDEATVVAQVKKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQP
Sbjct: 234 ADKVSVAVLHCPTIKPFDEATVVAQVKKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQP 293

Query: 181 AGFHLAGLPDAFLDAGALPTLHDRYGISCEVLGRRIKEWLK 221
           AGF LAGLPDAFLDAGALPTLHDRYGISCEVLGRRIKEWLK
Sbjct: 294 AGFQLAGLPDAFLDAGALPTLHDRYGISCEVLGRRIKEWLK 334


>gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score = 72.8 bits (177), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 8/218 (3%)

Query: 2   IAEENLNVKICCALPGLTTGYGPSHQATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIAA 61
           +A +NL+V       GL    G +H    DLA +R IP M ++   D  +  + +     
Sbjct: 397 VALQNLDVTFALDRAGLVGADGATHAGNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQ 456

Query: 62  HQGPVYMRLARG-NVPLVLDEYDYRFELGRAKEIRDGNDVLIISSGFMTMRALEVAKALE 120
           + GP  +R  RG  +   +D+      LGR +  R G +V I++ G +   +L       
Sbjct: 457 YPGPASVRYPRGAGIGAAVDQTLETLPLGRGEIRRQGKNVAILAFGSLLAPSLGA----- 511

Query: 121 ADKLSVAVLHCPTIKPFDEATVVAQVKKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQP 180
            DKL+  V +   IKP D   +V Q+   +  +V  E   ++GG G  V+  L    +  
Sbjct: 512 GDKLNATVANMRFIKPLD-VELVKQLAASHDALVTVEEGCIMGGAGAAVSEALAAAGINK 570

Query: 181 AGFHLAGLPDAFLDAGALPTLHDRYGISCEVLGRRIKE 218
              HL GLPD F+D G    L  + G+    +   I +
Sbjct: 571 PILHL-GLPDRFIDHGDAAQLLAQCGLDANGIADSIAQ 607


>gi|300309646|ref|YP_003773738.1| transketolase C-terminal subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 10/212 (4%)

Query: 15  LPGLTTGY-----GPSHQATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIAAHQGPVYMR 69
           L G+  GY     GP+HQ  ED+ +MRA+P   ++   D +         +   GP Y+R
Sbjct: 107 LIGVGAGYSYVVSGPTHQCYEDITLMRALPNFQVLSAADHVTAAAFFDTCSNSMGPKYLR 166

Query: 70  LARGNVPLVLDEYDYRFELGRAKEI-RDGNDVLIISSGFMTMRALEVAKALEADKLSVAV 128
                +P++    D   +L +   I R G  + ++++G+M   AL+ A+ L A+ + V V
Sbjct: 167 FDAQVLPVIYG--DGAPDLAQGFHIHRRGGKIGLVATGYMLHTALQAAEVLAAEGIEVGV 224

Query: 129 LHCPTIKPFDEATVVAQVKKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQPAGFHLAGL 188
           +    +  F    +   ++    +  + E     GG+  ++   + R  +Q    ++ G+
Sbjct: 225 IDLFDLARFSADALQETLQSYAGIATLEEGFRGRGGMDSMLFEFIARRGLQTRMLNI-GV 283

Query: 189 PDAF-LDAGALPTLHDRYGISCEVLGRRIKEW 219
              +  + G    LH+  GI  + +   I+E+
Sbjct: 284 DGVYRFELGTRTELHEEVGIGPQAVLTSIREF 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 711,719
Number of extensions: 29222
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)