BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0438.p
         (472 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   971   0.0  
gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   131   1e-31

>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/472 (99%), Positives = 470/472 (99%)

Query: 1   MTNKNIKPRRWCATLLVLAGLSALLSSCSSLPTIVPDMDTQSARTIQMKGGRGVLTEAQS 60
           MTNKNIKPRRWCATLLVLAGLSALLSSCSSLPTIVPDMDTQSARTIQMKGGRGVL+EAQS
Sbjct: 1   MTNKNIKPRRWCATLLVLAGLSALLSSCSSLPTIVPDMDTQSARTIQMKGGRGVLSEAQS 60

Query: 61  KAVLEKLRAQNADNTLLDRHVAIEGAITGSPLVTDNKVTLLIDGPATYASMQQAIQAARY 120
           KAVLEKLRAQNADNTLLDRHVAIEGAITGSPLVT NKVTLLIDGPATYASMQQAIQAARY
Sbjct: 61  KAVLEKLRAQNADNTLLDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARY 120

Query: 121 HINMETYIMEDDEVGRQFADLLIAMQKKGVQVNLMYDSVGALNTPRTFFQPMIDAGIQVL 180
           HINMETYIMEDDEVGRQFADLLIAMQ KGVQVNLMYDSVGALNTPRTFFQPMIDAGIQVL
Sbjct: 121 HINMETYIMEDDEVGRQFADLLIAMQNKGVQVNLMYDSVGALNTPRTFFQPMIDAGIQVL 180

Query: 181 EYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPRVNAE 240
           EYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPRVNAE
Sbjct: 181 EYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPRVNAE 240

Query: 241 GEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQRGPALGDHRYFPTVAPAGNEIVRAIGSS 300
           GEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQRGPALGDHRYFPTVAPAGNEIVRAIGSS
Sbjct: 241 GEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQRGPALGDHRYFPTVAPAGNEIVRAIGSS 300

Query: 301 PDDPYSVIYATFISAIQHAEKAIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS 360
           PDDPYSVIYATFISAIQHAEKAIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS
Sbjct: 301 PDDPYSVIYATFISAIQHAEKAIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDS 360

Query: 361 SLVLYASRSFYQELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN 420
           SLVLYASRSFYQELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN
Sbjct: 361 SLVLYASRSFYQELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEIN 420

Query: 421 AVILSPQFGVQMKSMFDRDLGASKEITKEQWEQRPISERMKEFGASVWARLL 472
           AVILSPQFGVQMKSMFDRDLGASKEITKEQWEQRPISERMKEFGASVWARLL
Sbjct: 421 AVILSPQFGVQMKSMFDRDLGASKEITKEQWEQRPISERMKEFGASVWARLL 472


>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 160/343 (46%), Gaps = 29/343 (8%)

Query: 96  NKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQKKGVQVNLM 155
           N++ LL  G   Y ++  AI AAR  I +ETYI   D+ G    + L     +GV V ++
Sbjct: 10  NQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAAGRGVVVYVI 69

Query: 156 YD--SVGALNTPRTFFQPMIDAGIQVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAF 213
            D    G  NT +     +  AG+Q   +NP      R+      R HRKL VVD + AF
Sbjct: 70  NDWLGTGRENTNKLHL-ALSAAGVQHRSFNPW----FRRG---VARSHRKLCVVDRQVAF 121

Query: 214 VGGINISS-VYSSGSFSTRKKKPRVNAEGEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQ 272
           VGG+NI+  + S     T    PR         W D  V I GP+  E  +     W + 
Sbjct: 122 VGGLNINDDMVSDRDHMTPLPAPR---------W-DFAVSILGPLVQEIYREVQAQWLRV 171

Query: 273 RGPALGDH-RYFPTV-----APAGNEIVRAIGSSPD-DPYSVIYATFISAIQHAEKAIYL 325
               L    R F  +      P  ++   A+    +      I   ++ A+  A ++ +L
Sbjct: 172 GHMKLKARWRNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFL 231

Query: 326 TNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASRSFYQELLEAGIRIYERQ 385
            N YF P  ++R +L++AA RGV V L+L       +    + SFY +LL AG+RI E  
Sbjct: 232 ANPYFAPGRKMRRALEEAAMRGVKVTLLLGV-GQFMMQDAVAHSFYPKLLRAGVRIIEYT 290

Query: 386 DALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQF 428
              LH+K A++D  W+T+GS+N D  S   NQE N V+  P F
Sbjct: 291 RTELHAKVAVVDDKWATVGSSNYDGLSLFVNQEANVVVQDPAF 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,397,562
Number of extensions: 56959
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 3
Length of query: 472
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,198,455
Effective search space: 459008265
Effective search space used: 459008265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)