BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0436.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...   308   3e-85
gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum serope...   214   4e-57

>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  308 bits (788), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/176 (93%), Positives = 164/176 (93%)

Query: 1   MFKKIWFQLHWFIGITAGTVLMTIGVTGALLAFREEIMDLLSPGVMHVQVRQQATLTPQQ 60
           MFKKIWFQLHWFIGITAGTVLMTIGVTGALLAFREEIMDLLSPGVMHVQVRQQATLTPQQ
Sbjct: 1   MFKKIWFQLHWFIGITAGTVLMTIGVTGALLAFREEIMDLLSPGVMHVQVRQQATLTPQQ 60

Query: 61  VLEKLRQEEPQRRITTMTLSAEPGDSVRVVFAPPPGERRGQARYVDPYTGALLPPVTGME 120
           VLEKLRQEEPQRRITTMTLSAEPGDSVRVVFAPPPGERRGQARYVDPYTGALLPPVTGME
Sbjct: 61  VLEKLRQEEPQRRITTMTLSAEPGDSVRVVFAPPPGERRGQARYVDPYTGALLPPVTGME 120

Query: 121 FFEFTERFHRWLLLPTEIGKIVLGTLALCLLMLALSGLYDLEPIRLSYLNEALHLS 176
           FFEFTERFHRWLLLPTEIGKIVLGTLALCLLMLALSGLY   P R   L   L L 
Sbjct: 121 FFEFTERFHRWLLLPTEIGKIVLGTLALCLLMLALSGLYLRWPRRALSLRAWLRLD 176


>gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  214 bits (546), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/109 (98%), Positives = 108/109 (99%)

Query: 152 MLALSGLYDLEPIRLSYLNEALHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQ 211
           + ALSGLYDLEPIRLSYLNEALHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQ
Sbjct: 169 VCALSGLYDLEPIRLSYLNEALHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQ 228

Query: 212 RDVYAANLRQSGHQVEVVEAAQAHHLSIIDVAADGQSAFTRTVLRMMQD 260
           RDVYAANLRQSGHQVEVVEAAQAHHLSIIDVAADGQSAFTRTVLRMMQD
Sbjct: 229 RDVYAANLRQSGHQVEVVEAAQAHHLSIIDVAADGQSAFTRTVLRMMQD 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 775,853
Number of extensions: 29933
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)