BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0434.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310448|ref|YP_003774540.1| transcription regulator protein... 623 e-180 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 217 8e-58 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 214 1e-56 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 182 3e-47 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 145 5e-36 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 623 bits (1607), Expect = e-180, Method: Compositional matrix adjust. Identities = 306/306 (100%), Positives = 306/306 (100%) Query: 1 MPLIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTA 60 MPLIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTA Sbjct: 1 MPLIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTA 60 Query: 61 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIE 120 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIE Sbjct: 61 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIE 120 Query: 121 ACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI 180 ACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI Sbjct: 121 ACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI 180 Query: 181 GHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY 240 GHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY Sbjct: 181 GHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY 240 Query: 241 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI Sbjct: 241 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 Query: 301 SEHFAE 306 SEHFAE Sbjct: 301 SEHFAE 306 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 217 bits (553), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 118/298 (39%), Positives = 176/298 (59%), Gaps = 4/298 (1%) Query: 8 DIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTP 67 + DLNLL + VF+ER +S+ AR+L +SQPAVS AL +LR + D LFV+T +GMQPTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 68 FAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAP 127 A L P LQ+V + + F P T+ +RF +A++D+GE+ +P L+E AP Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 128 GVSISTVRAGAIDLKSEMESGRVDLAIGAFDNL-SEALYQRRLFRQEYVSMFRIGHALDK 186 S+ TV +L + +ESG VDLAIG F +L + +Q+RLF Q++V + R GH L Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPL-- 180 Query: 187 PGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTA 246 P + ++SL+ + AA H++V ++ + L + I V HF A+P +V+++ Sbjct: 181 PAQ-KISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLVATSD 239 Query: 247 LVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFISEHF 304 LV TVPR E G+R ++P +P L WHR+Y++D GN WLRG + F Sbjct: 240 LVATVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGLAAALF 297 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 214 bits (544), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 166/295 (56%), Gaps = 4/295 (1%) Query: 8 DIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTP 67 ++DLNLL VFQ + ER ++ RL LSQPAVS AL RLR+ F+D LF+RT +GMQPTP Sbjct: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPTP 65 Query: 68 FAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAP 127 A +LA+P+ ALQ V AL E F P S R F +MTDV E+ F+P L E AP Sbjct: 66 AALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAP 125 Query: 128 GVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGHALDKP 187 V + + L+ + +G++D A G L LFR+ YV + R L P Sbjct: 126 DVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGL--P 183 Query: 188 GRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTAL 247 R ++ L EFLA H++V S ES + ++ + +K G+ + +PHFT +P I+ + L Sbjct: 184 QRAQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDL 243 Query: 248 VVTVPRKLAE--SAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 V TVP ++A + P + P+ +P ++ + WH+ ++ D GN WLR + Sbjct: 244 VATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIV 298 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 182 bits (462), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 3/296 (1%) Query: 10 DLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTPFA 69 DLNLL F +++ R +++ A RL L+QPAVS+AL RLR F+D LFVR+ M PT A Sbjct: 10 DLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETA 69 Query: 70 EQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAPGV 129 +L EP+A AL + AL+ F P T+ R F + M+D+ + +P L+E A AP V Sbjct: 70 IRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHV 129 Query: 130 SISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGHALDKPGR 189 SI + +L + M +G VDLA G L E + + +Y+ M R H L + Sbjct: 130 SIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRREHPL---AQ 186 Query: 190 GEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTALVV 249 G ++L+ L ++ + + + L AG+ V R+PHFT P IV T L + Sbjct: 187 GPLTLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVRITDLAL 246 Query: 250 TVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFISEHFA 305 +PR +AE + PL +P + +++ H R++ D G WLR + E F Sbjct: 247 FLPRSIAERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEMFG 302 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%) Query: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTPF 68 +DLNLL VF V E+ ++ A L ++QPAVSNAL RLR + D+L +RTA G++PTP Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 Query: 69 AEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARCAPG 128 AE+L V AL ++ A+ E F + F +AM D ++P+L+ R AP Sbjct: 66 AEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 129 VSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEAL-----------YQRRLFRQEYVSM 177 + I + D ++ + G +DLA+G F ++ L RL+ +YV + Sbjct: 125 IKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCV 184 Query: 178 FRIGHALDKPGRGE-VSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFT 236 H P G+ ++L + A+HL+VS P+ I+ L + V F Sbjct: 185 MHKSH----PLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 Query: 237 AVPYIVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWL 296 IV+S+ L+ +PR L + L + P + P +M WH R ++ + WL Sbjct: 241 TAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 Query: 297 RGFIS 301 R +S Sbjct: 301 RAHLS 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 870,332 Number of extensions: 32071 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 12 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)