BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0430.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H...   439   e-125
gi|300313332|ref|YP_003777424.1| stringent starvation transcript...    58   6e-10
gi|300310406|ref|YP_003774498.1| glutathione S-transferase [Herb...    55   4e-09

>gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  439 bits (1130), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 213/215 (99%)

Query: 1   MTTLYSYFRSSASYRVRIALHLKGLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE 60
           MTTLYSYFRSSASYRVRIALHLK LPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE
Sbjct: 1   MTTLYSYFRSSASYRVRIALHLKDLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE 60

Query: 61  EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACDIHPLNNLRVLKYLKR 120
           EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACDIHPLNNLRVLKYLKR
Sbjct: 61  EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACDIHPLNNLRVLKYLKR 120

Query: 121 ELGMDDVRKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRF 180
           ELGMDD RKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRF
Sbjct: 121 ELGMDDERKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRF 180

Query: 181 EVDMAPYPTLCAIEQACHALPAFQQAHPAQQPDAA 215
           EVDMAPYPTLCAIEQACHALPAFQQAHPAQQPDAA
Sbjct: 181 EVDMAPYPTLCAIEQACHALPAFQQAHPAQQPDAA 215


>gi|300313332|ref|YP_003777424.1| stringent starvation transcription
           regulator A protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 1   MTTLYSYFRSSASYRVRIALHLKGLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE 60
           M  LYS      S R R+ L  KG+ +E   V L N+  +      + +NP+  VP+L E
Sbjct: 1   MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPED-----ISVMNPYGQVPILVE 55

Query: 61  EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACD----IHPLNNLRVLK 116
               + +S  + E ++ER P P L+P D   RA  R +      +    +H L N +   
Sbjct: 56  RDLVLYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLENEKSKA 115

Query: 117 YLK-RELGMDDVRKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIF 175
             K +E   +++R                  QLA    +  + +GD  +M D  L P ++
Sbjct: 116 AEKSQEKARNEIRDRLT--------------QLAPLFLKNKYMLGDEFSMLDVALAPLLW 161

Query: 176 NARRFEVDMA 185
               + ++++
Sbjct: 162 RLDHYGIELS 171


>gi|300310406|ref|YP_003774498.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 55.5 bits (132), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 13/195 (6%)

Query: 10  SSASYRVRIALHLKGLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAEEGHYVSQSL 69
           S  ++R  +   L GLP E V V L    G    PAF  +NP   VPVL +    ++ S 
Sbjct: 9   SGHAHRAVLFASLLGLPAELVEVDL--AAGAHKKPAFLALNPFGQVPVLEDGEVVIADSN 66

Query: 70  AMLELLEERHPTPSLLPGDAFQRAHI-RALSLAIACDIHPLNNLRVLKYLKRELGMDDVR 128
           A+L  L ++      LP DA   A + R LS+A     +     R++         ++V 
Sbjct: 67  AILVYLAKKAGRSDWLPEDAQGAAAVQRWLSVAAGELAYGPAAARLVTVFGAAFNAEEVI 126

Query: 129 KNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRFEVDMAPYP 188
           + A      +L    LE+ LA    +  +   D PT+AD  +   +  A    VD+  YP
Sbjct: 127 QRA------HLLLGRLEQHLA----KRDWLAADHPTIADVAVYSYLARAPEGNVDLRGYP 176

Query: 189 TLCAIEQACHALPAF 203
            +    Q   ALP F
Sbjct: 177 GVQGFLQRIEALPGF 191


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 661,158
Number of extensions: 27230
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)