BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0410.p
         (441 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [H...   890   0.0  
gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H...    83   5e-17

>gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/441 (99%), Positives = 440/441 (99%)

Query: 1   MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNW 60
           MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNW
Sbjct: 1   MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNW 60

Query: 61  GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYLSNDEEEIARWAAWGDF 120
           GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYLSNDEEEIARWAAWGDF
Sbjct: 61  GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYLSNDEEEIARWAAWGDF 120

Query: 121 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARPIMKLGGHVI 180
           AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVAR IMKLGGHVI
Sbjct: 121 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 180

Query: 181 QQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 240
           QQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS
Sbjct: 181 QQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 240

Query: 241 VAPMEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 300
           VAPMEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS
Sbjct: 241 VAPMEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 300

Query: 301 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPASIRATHRRAVELLPQLAQAK 360
           LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPASIRATHRRAVELLPQLAQAK
Sbjct: 301 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPASIRATHRRAVELLPQLAQAK 360

Query: 361 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGAAPIV 420
           VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGAAPIV
Sbjct: 361 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGAAPIV 420

Query: 421 DPRPYHPNRFSDSSWGKVADF 441
           DPRPYHPNRFSDSSWGKVADF
Sbjct: 421 DPRPYHPNRFSDSSWGKVADF 441


>gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 167/439 (38%), Gaps = 81/439 (18%)

Query: 2   SPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNWG 61
           SP  V  Q+ T+P  + DVVV+GGGI G   A  LA++G  V V E   +G   S RN G
Sbjct: 12  SPAFVS-QTQTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVGGAASGRNGG 70

Query: 62  WCRQ-----------------QNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYL 104
            C                    NR  R        +D  E+   E   D  F R G L L
Sbjct: 71  MCNNGFAQDYATLSQRLGVEWANRLYRAF---DAGVDTVERLVREESIDCSFARHGKLKL 127

Query: 105 SNDEEEIARWAAWGD-FAKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGK 163
           +   E + + A   +  A+     T +L   Q   R       + GG+          G+
Sbjct: 128 AAKPEHVDKLARSQELLARHVDGDTRLLSRAQL--RDELGSDRYHGGLLMHKSAGMHVGR 185

Query: 164 AAPAVARPIMKLGGHVIQQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCH 223
               +A+   + G   +++    GI+ + GR + V T AGV+     ++A G        
Sbjct: 186 YVRGLAQAAQRRGALYLERTPVLGIEAKNGRYA-VRTSAGVLHAGQVLLASG------IS 238

Query: 224 QLGIRFPQASVRQSIMSVAP---MEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPT 280
           Q+G   P   +R+ I+ V     +  PLPGAL    +   R    +       RA  D  
Sbjct: 239 QVG---PFGWIRRRIVPVGAFLIVTEPLPGALLKQLLPTQRMYTDTKNFVNYFRATPDQR 295

Query: 281 MQFLRFSPQFLPMFAKRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPA 340
           + F                    GG            R R  A  P          +D  
Sbjct: 296 LLF--------------------GG------------RARFAASNP---------QSDAR 314

Query: 341 SIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFG 400
           S      + +E+ P LAQ ++ + W G VD T D +P  G   Q  GL  + G+SGHG  
Sbjct: 315 SGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAG---QRDGLYYSMGYSGHGTH 371

Query: 401 IGPGAGHLIADLASGAAPI 419
           +    G ++A++  G A +
Sbjct: 372 MATLMGSMMAEIMDGHAEL 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,483,851
Number of extensions: 63671
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,203,190
Effective search space: 424726070
Effective search space used: 424726070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)