BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0406.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310472|ref|YP_003774564.1| hippurate hydrolase [Herbaspiri...   149   4e-37
gi|300312475|ref|YP_003776567.1| metal-dependent amidase/aminoac...    61   1e-10
gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum ...    61   2e-10

>gi|300310472|ref|YP_003774564.1| hippurate hydrolase
          [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MEHTGHQHDTLHQHRAHWAGLRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGT 60
          MEHTGHQHDTLHQHRAHWAGLRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGT
Sbjct: 1  MEHTGHQHDTLHQHRAHWAGLRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGT 60

Query: 61 GVVASLA 67
          GVVASLA
Sbjct: 61 GVVASLA 67


>gi|300312475|ref|YP_003776567.1| metal-dependent
          amidase/aminoacylase/carboxypeptidase [Herbaspirillum
          seropedicae SmR1]
          Length = 399

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 3  HTGH--QHDTLHQHRAHWAGLRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGT 60
          H GH  +   LH  +     +RR LH HPEL FEE  TA +V + L+  GY VTR +GG 
Sbjct: 5  HPGHLCEVGDLHDIQDEITAIRRHLHQHPELSFEEVDTAALVAQRLEQWGYAVTRHIGGN 64

Query: 61 GVVASLAVTRSAASC 75
          G+VA+L V  SA S 
Sbjct: 65 GLVATLRVGSSARSI 79


>gi|300310161|ref|YP_003774253.1| aminohydrolase [Herbaspirillum
          seropedicae SmR1]
          Length = 402

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 33/46 (71%)

Query: 21 LRRDLHAHPELRFEEHRTADVVVRELQSLGYTVTRGLGGTGVVASL 66
          +RR LHAHPELRFEE RTA  V   L+S G TV   +GG GVVA+L
Sbjct: 20 IRRHLHAHPELRFEEKRTASFVADMLRSYGLTVAENIGGYGVVATL 65


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.131    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 622,174
Number of extensions: 12330
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 132 (55.5 bits)