BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0405.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310473|ref|YP_003774565.1| amino acid aldolase or racemase...   762   0.0  

>gi|300310473|ref|YP_003774565.1| amino acid aldolase or racemase
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/376 (98%), Positives = 373/376 (99%)

Query: 1   MNLASLPTPAALIDVARMQRNIARMQQRMDALGVRFRPHVKTTKCNEVVQAQLQAGASGI 60
           MNLASLPTPAALIDVARMQRNI RMQQRMDALGVRFRPHVKTTKCNEVVQAQLQAGASGI
Sbjct: 1   MNLASLPTPAALIDVARMQRNITRMQQRMDALGVRFRPHVKTTKCNEVVQAQLQAGASGI 60

Query: 61  TVSTLKEAEQFFAAGINDIVYAVGMAPTKLGQALALRRQGCNLKIVADSVVCAEAIVAFG 120
           TVSTLKEAEQFFAAGI+DIVYAVGMAPTKLGQALALRRQGCNLKIVADSVVCAEAIVAFG
Sbjct: 61  TVSTLKEAEQFFAAGISDIVYAVGMAPTKLGQALALRRQGCNLKIVADSVVCAEAIVAFG 120

Query: 121 QAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGVIAHAGSSYDYDNDD 180
           QAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGVIAHAGSSYDYDND+
Sbjct: 121 QAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGVIAHAGSSYDYDNDE 180

Query: 181 ALIAVAEQERAGCVRAAERLREAGLPCDVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 240
           ALIAVAEQERAGCVRAAERLREAGLPCDVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL
Sbjct: 181 ALIAVAEQERAGCVRAAERLREAGLPCDVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 240

Query: 241 VMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 300
           VMHNVGVNTM EIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT
Sbjct: 241 VMHNVGVNTMYEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 300

Query: 301 EEGQVLEGYLMSGANQEHGILSRQGTPDAQIAERLPIGTRLRILPNHACATGAQHQHYHA 360
           EEGQVLEGYLMSGANQEHGILSRQGTPDAQIAE LPIGTRLRILPNHACATGAQHQHYHA
Sbjct: 301 EEGQVLEGYLMSGANQEHGILSRQGTPDAQIAEHLPIGTRLRILPNHACATGAQHQHYHA 360

Query: 361 IAADGSVATWPRFNGW 376
           IAADGSVATWPRFNGW
Sbjct: 361 IAADGSVATWPRFNGW 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,258,173
Number of extensions: 55421
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)