BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0397.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146...   330   7e-92

>gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  330 bits (845), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 217/243 (89%), Positives = 220/243 (90%), Gaps = 4/243 (1%)

Query: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60
           MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA
Sbjct: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60

Query: 61  KAQVAALQSQVQALQAGGAREPGFLDGNAWGRAATASRPQAYGSAAPAYAAPAAPAYQAA 120
           KAQVAALQSQVQALQAGGAREPGFLDGNAWGRAATASRPQAYGSAAPA  A  A A  AA
Sbjct: 61  KAQVAALQSQVQALQAGGAREPGFLDGNAWGRAATASRPQAYGSAAPATPAAPAYAAPAA 120

Query: 121 PAPAPAPSPSSGFFGGGMGSM----LGTVAATAAGVAGGAFLYQGIEHLFNGNGGSGFAH 176
           PA   AP+P+     G  G      LGTVAATAAGVAGGAFLYQGIEHLFNGNGGSGFAH
Sbjct: 121 PAYQAAPAPAPAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNGGSGFAH 180

Query: 177 QNGLSAPVENIENTTVNNYYGSDADRSSDRASSDGNDFGSSNDLADLGNVDLDDSGGYDD 236
           QNGLSAPVENIENTTVNNYYGSDADRSSD+ASSDGNDFGSSNDLADLGNVDLDDSGGYDD
Sbjct: 181 QNGLSAPVENIENTTVNNYYGSDADRSSDQASSDGNDFGSSNDLADLGNVDLDDSGGYDD 240

Query: 237 SLV 239
           SLV
Sbjct: 241 SLV 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 419,113
Number of extensions: 10181
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)