BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0382.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310493|ref|YP_003774585.1| transcription regulator protein... 544 e-156 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 152 2e-38 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 135 3e-33 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 130 1e-31 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 97 2e-21 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 544 bits (1402), Expect = e-156, Method: Compositional matrix adjust. Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MNEPDDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETL 60 MNEPDDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETL Sbjct: 1 MNEPDDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETL 60 Query: 61 GYICKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEM 120 GYICKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEM Sbjct: 61 GYICKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEM 120 Query: 121 VYVARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRT 180 VYVARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRT Sbjct: 121 VYVARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRT 180 Query: 181 DVEDIMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA 240 DVEDIMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA Sbjct: 181 DVEDIMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA 240 Query: 241 EKKLGPLVLECARAISNSVRTLV 263 EKKLGPLVLECARAISNSVRTLV Sbjct: 241 EKKLGPLVLECARAISNSVRTLV 263 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 147/251 (58%), Gaps = 2/251 (0%) Query: 6 DTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK 65 D +D F SL +GLAV+RAF+ R++T+ ++ TGI +++ +R +HTL+ LGY Sbjct: 8 DALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGY--A 65 Query: 66 HPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVAR 125 + L PK++ +GY+YL++ L A P+L+ ++ GE+ +L D E++YVAR Sbjct: 66 DSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVAR 125 Query: 126 FVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDI 185 AS+ + + + GSR+P YCT+ GRA L+ L ++ +A + + T T + + Sbjct: 126 SAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRL 185 Query: 186 MQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLG 245 +LA R G+A EEL +G SIA PV + +A+++V A +R SV + E+++ Sbjct: 186 RDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEIL 245 Query: 246 PLVLECARAIS 256 P++L A+ +S Sbjct: 246 PVLLRGAQELS 256 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 LEKGL +L AF+ ++ MT VA+ TG+S+++A+R + TLE LGY+ H + + + LT Sbjct: 32 GLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYL--HSEGKTFALT 89 Query: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 P+V++VG++Y + L + PFL ++ TGE V + ++V++AR A++ + Sbjct: 90 PRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGATRVMTTG 149 Query: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 +G+R+P + G LSAL ++ + L + T TPHT TD + + L+A +R+ Sbjct: 150 FVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYALIAQARQL 209 Query: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECARAI 255 G+A ++L G IA P+ N K + ++ + P + + E+ ++ P + + A A+ Sbjct: 210 GYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILPALQQAANAL 269 Query: 256 SNSV 259 N V Sbjct: 270 INLV 273 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 130 bits (326), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 132/235 (56%), Gaps = 2/235 (0%) Query: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 LEKGL V+ AF+ + +T+ +VA TG+++++A+R + TL LGY+ KT + LT Sbjct: 25 GLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT--FSLT 82 Query: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 P V+ +G +YL + L + P L LA GE + ++V VA A + + Sbjct: 83 PMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVSTT 142 Query: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 + G+R+P YCTA+GR L+ L P + AIL ++ T HT TDVE + +A +R + Sbjct: 143 LQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARARVQ 202 Query: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLE 250 G+A +EL LG ++A PV N + VA++++ R +E+ ++ P +L+ Sbjct: 203 GYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDMVERCLPAMLK 257 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 111/236 (47%), Gaps = 4/236 (1%) Query: 5 DDTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYIC 64 D DL+ + L KG V+ AF++ ++ +VA G+++S+A+R + TL G Sbjct: 10 DIQKRDLI--EGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAA 67 Query: 65 KHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVA 124 K ++ L P+++ +G +YL + + PFL L E+ N + E+VYV Sbjct: 68 SDGK--KFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVT 125 Query: 125 RFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVED 184 R A++ + G+R+P Y T +GR L E E QA LE HT TD Sbjct: 126 RVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAA 185 Query: 185 IMQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEA 240 + Q + R +G+ + +G IA V N + + ++ V + + S EEA Sbjct: 186 LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEA 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,125 Number of extensions: 28321 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 10 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)