BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0379.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 489 e-139 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 295 2e-81 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 275 3e-75 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 273 1e-74 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 255 3e-69 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 489 bits (1258), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/242 (99%), Positives = 241/242 (99%) Query: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAREQARSEAMSL 120 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAR QARSEAMSL Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 Query: 241 GK 242 GK Sbjct: 241 GK 242 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 295 bits (756), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 181/240 (75%) Query: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MI+V ++ K FG+ +L+ + + EVVC+IGPSGSGKST LRC+NGLE GDI I Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAREQARSEAMSL 120 +G +++ +++ LR +GMVFQRFNLFPH TVLEN+ P+ V L+R +A A L Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L KVGL + DA+P QLSGGQQQRVAIAR+LAM+P+ +LFDEPTSALDPELVGEVL VM+ Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFAREV+DRV F+ G I+E G QVL +P H RT+DFLR+V+ Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 275 bits (703), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 144/247 (58%), Positives = 183/247 (74%), Gaps = 5/247 (2%) Query: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 ++EV + K FG H VLKD+ LSVA +VV +IGPSGSGKST LRC+NGLE E G + + Sbjct: 5 IVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 Query: 61 DGQRVDRDG---PD--IHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAREQARS 115 G+ V G P+ + LR VGMVFQ FNLFPH TVL+N+T P + G++R+ A+ Sbjct: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 Query: 116 EAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEV 175 +A+ LL+KVGLA + AYP LSGGQ+QRVAIAR+LAM+P+ +LFDEPTSALDPELVGEV Sbjct: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGEV 184 Query: 176 LAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDF 235 L V+R LAA+GMTMI+VTHEMGFAREVAD V + GSIVE+G + PQ ART+ F Sbjct: 185 LQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRSF 244 Query: 236 LRRVIGK 242 L+ ++ + Sbjct: 245 LQTMLAR 251 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 273 bits (698), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 130/240 (54%), Positives = 176/240 (73%) Query: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIE+ +SK +G +VL D S SV +G+VV + GPSGSGKST+++ +NGLE +++G I + Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAREQARSEAMSL 120 DG V ++ +LR R+GMVFQ F LFPH ++ EN+T G I V G ++E+A + + Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LD+VGL A D +P QLSGGQQQRVAIAR+L+M P A+LFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFAR+VA+RV F+ G +VE A + A+P+ R +DFL ++I Sbjct: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKII 240 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 255 bits (651), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/239 (54%), Positives = 169/239 (70%) Query: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 M+E K +SK FG + VL ++L++ +GEVV LIGPSGSGKST+LRCIN LE + GD+L+ Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLAREQARSEAMSL 120 DG V + +R GMVFQ+FNLFP T LENV GP +V G + E+A + A L Sbjct: 61 DGISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALASEL 120 Query: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 L KVGLA R YP +LSGGQQQRVAIAR+LA++P+ +LFDEPTSALDPEL EVL VM+ Sbjct: 121 LAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRVMQ 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRV 239 +LA +GMTMIVVTHE+ FAR V R+ F+ +G I G +++ + R ++FL+ V Sbjct: 181 SLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIENSCNPRLREFLKHV 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 735,952 Number of extensions: 30054 Number of successful extensions: 577 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 150 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)