BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0378.p (399 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [H... 796 0.0 gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [H... 167 1e-42 gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H... 163 2e-41 >gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/399 (99%), Positives = 398/399 (99%) Query: 1 VAIVGAGYTGLSTALHLAQAGVSVCVLDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFG 60 VAIVGAGYTGLSTALHLAQAGVSVCVLDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFG Sbjct: 35 VAIVGAGYTGLSTALHLAQAGVSVCVLDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFG 94 Query: 61 SAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMRALEARARQWMAEG 120 SAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMRALEARARQWMAEG Sbjct: 95 SAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMRALEARARQWMAEG 154 Query: 121 APAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTR 180 APAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTR Sbjct: 155 APAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTR 214 Query: 181 LERRQGGWRLHGPSGEQGPHIDAERVVLATNGYTDDLWPHLRQSVIAANSFIVATRPLPP 240 LERRQGGWRLHGPSGEQGPHIDAERVVLATNGYTDDLWPHLRQSVIAANSFIVATRPLPP Sbjct: 215 LERRQGGWRLHGPSGEQGPHIDAERVVLATNGYTDDLWPHLRQSVIAANSFIVATRPLPP 274 Query: 241 ALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGPFGEPQGPADFAHLERSVALLFP 300 ALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGPFGEPQGPADFAHLERSVALLFP Sbjct: 275 ALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGPFGEPQGPADFAHLERSVALLFP 334 Query: 301 QLAGVQYEYRWSGRVAITRDFLPHVHEPAPGLSIALGYNGRGIAMATTMGQRLAQRLIGP 360 QLAGV+YEYRWSGRVAITRDFLPHVHEPAPGLSIALGYNGRGIAMAT MGQRLAQRLIGP Sbjct: 335 QLAGVEYEYRWSGRVAITRDFLPHVHEPAPGLSIALGYNGRGIAMATMMGQRLAQRLIGP 394 Query: 361 AGTAFPFPVSTIAPIPLHGLQRFYIAAGVAWYSVLDRFS 399 AGTAFPFPVSTIAPIPLHGLQRFYIAAGVAWYSVLDRFS Sbjct: 395 AGTAFPFPVSTIAPIPLHGLQRFYIAAGVAWYSVLDRFS 433 >gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 430 Score = 167 bits (424), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 144/413 (34%), Positives = 202/413 (48%), Gaps = 23/413 (5%) Query: 1 VAIVGAGYTGLSTALHLAQAGVSVCVLDA--HAPGWGASGRNGGQVIPGLKYDPDQLRVM 58 VAIVG G+TGLS AL LA+ G SV VL+A H ASGRNGG V GL D +L Sbjct: 27 VAIVGGGFTGLSAALALARRGASVVVLEAGPHVAA-EASGRNGGHVNNGLAVDYAELAAK 85 Query: 59 FGSAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMRALEARARQWMA 118 G A A A DTV L+ I+C+ R G ++ P M AL+ A + +A Sbjct: 86 VGVERARAWYHAYDDAVDTVARLVQEEQIDCDFLRHGKLKMATRPYQMDALQRSADRLIA 145 Query: 119 EGA--PAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRLGVVIHGDT 176 +G +++D V + + + GG +R+G +H ++ GLA AA+R G IH T Sbjct: 146 DGVDLDVEILDAQRVQAEVQSERFHGGLLYKRSGQMHMGRFAYGLAMAAERQGAAIHTGT 205 Query: 177 RVTRLER--RQGGWRLHGPSGEQGPHIDAERVVLAT-----NGYTDDLWPHLRQSVIAAN 229 V RLER + G RLH G + A +V+LAT Y W LR+ ++ Sbjct: 206 EVRRLERIGQTHGHRLHTTRGA----VLARQVLLATGASRHGAYGSFGW--LRRRIVPIG 259 Query: 230 SFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGPFGEPQGPADFA 289 SFIV T PL A++L + + Y+R RL+ GGR F +D A Sbjct: 260 SFIVVTEPLGAQRAATLLKHQRTYTTVANIHHYFRMTPDTRLVFGGRARFAISSPQSDAA 319 Query: 290 H---LERSVALLFPQLAGVQYEYRWSGRVAITRDFLPHVHEPAPGLSIALGYNGRGIAMA 346 L R + FPQL V+ +Y W G V +TRD LP E GL ++GY+G G M+ Sbjct: 320 SGEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLPQAGER-DGLYYSMGYSGHGTQMS 378 Query: 347 TTMGQRLAQRLIGPAGTAFPFPVSTIAPIPLHGLQRFYIAAGVAWYSVLDRFS 399 MGQ +A+ + G A A P+ IP H +++ +Y + D+ + Sbjct: 379 VHMGQCMAKVMAGDA-LANPWREREWPAIPGHFGAPWFLPLVGLYYRLKDKLA 430 >gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 425 Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 193/397 (48%), Gaps = 16/397 (4%) Query: 9 TGLSTALHLAQAGVSVCVLDAHAPGWGASGRNGGQVIPGLKYDPDQLRVMFGSAVADPLI 68 TG + AL LA+ G V V +A G ASGRNGG G D L G A+ L Sbjct: 37 TGSAAALALARKGARVVVCEADIVGGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLY 96 Query: 69 AAIGSAADTVFDLIARHGIECEAQRAGWI----QPTHSPKMMRALEARARQWMAEGAPAQ 124 A + DTV L+ I+C R G + +P H K+ R+ E AR + + Sbjct: 97 RAFDAGVDTVERLVREESIDCSFARHGKLKLAAKPEHVDKLARSQELLARHVDGD---TR 153 Query: 125 LMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAAQRLGVVIHGDTRVTRLERR 184 L+ A++ +G+ Y GG ++ +H +Y RGLAQAAQR G + T V +E + Sbjct: 154 LLSRAQLRDELGSDRYHGGLLMHKSAGMHVGRYVRGLAQAAQRRGALYLERTPVLGIEAK 213 Query: 185 QGGWRLHGPSGEQGPHIDAERVVLATNGYTDDLWPHLRQSVIAANSFIVATRPLPPALGA 244 G + + +G + A +V+LA+ + +R+ ++ +F++ T PLP AL Sbjct: 214 NGRYAVRTSAGV----LHAGQVLLASGISQVGPFGWIRRRIVPVGAFLIVTEPLPGALLK 269 Query: 245 SILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGPF--GEPQGPADFAHLERSVAL-LFPQ 301 +LP + +D++ + Y+R RLL GGR F PQ A + R+ L +FP Sbjct: 270 QLLPTQRMYTDTKNFVNYFRATPDQRLLFGGRARFAASNPQSDARSGEILRAQMLEVFPA 329 Query: 302 LAGVQYEYRWSGRVAITRDFLPHVHEPAPGLSIALGYNGRGIAMATTMGQRLAQRLIGPA 361 LA + +Y W G V +T D LP + GL ++GY+G G MAT MG +A+ + G A Sbjct: 330 LAQTRIDYCWGGMVDMTTDRLPRAGQ-RDGLYYSMGYSGHGTHMATLMGSMMAEIMDGHA 388 Query: 362 GTAFPFPVSTIAPIPLHGLQRFYIAAGVAWYSVLDRF 398 P+ IP H + +++ AWY + DR Sbjct: 389 ELN-PWKDFDWPAIPGHFGKPWFLPFVGAWYRLKDRL 424 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,507,239 Number of extensions: 72441 Number of successful extensions: 315 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 4 Length of query: 399 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 312 Effective length of database: 1,207,925 Effective search space: 376872600 Effective search space used: 376872600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)