BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0360.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310513|ref|YP_003774605.1| small-conductance mechanosensit...   716   0.0  

>gi|300310513|ref|YP_003774605.1| small-conductance mechanosensitive
           channel protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/358 (99%), Positives = 357/358 (99%)

Query: 95  MFPLTVAQVAMRFVFYVLRGIFVKDATVGALLHLSEKAIAVLVWLCVVLWITGLWPDFVD 154
           MFPLTVAQVAMRFVFYVLRGIFVKDATVGALLHLSEKAIAVLVWLCVVLWITGLWPDFVD
Sbjct: 1   MFPLTVAQVAMRFVFYVLRGIFVKDATVGALLHLSEKAIAVLVWLCVVLWITGLWPDFVD 60

Query: 155 YLDGTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR 214
           YLDGTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR
Sbjct: 61  YLDGTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR 120

Query: 215 MLRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV 274
           MLRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV
Sbjct: 121 MLRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV 180

Query: 275 IGDMVAVDKYFGKVTQINTRYTILEGLDGIESVLPNELFVSNPVQNYSLTHRIVRLSTQL 334
           IGDMVAVDKYFGKVTQINTRYTILEGLDGIESVLPNELFVSNPVQNYSLTHRIVRLSTQL
Sbjct: 181 IGDMVAVDKYFGKVTQINTRYTILEGLDGIESVLPNELFVSNPVQNYSLTHRIVRLSTQL 240

Query: 335 TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLDLELGFWITDPENGRLN 394
           TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLDLELGFWITDPENGRLN
Sbjct: 241 TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLDLELGFWITDPENGRLN 300

Query: 395 VLSDVNRAIWAAFKQHGIEVAHAKRDIRIMDERSFRQSTGKENPDMPGVQNSRTMPGN 452
           VLSDVNRAIWAAFKQHGIEVAHAKRDIRIMDERSFRQSTGKENPDMPG QNSRTMPGN
Sbjct: 301 VLSDVNRAIWAAFKQHGIEVAHAKRDIRIMDERSFRQSTGKENPDMPGGQNSRTMPGN 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,151,125
Number of extensions: 39542
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)