BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0354.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl di...   652   0.0  

>gi|300310519|ref|YP_003774611.1| 4-hydroxy-3-methylbut-2-enyl
           diphosphate reductase [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/323 (99%), Positives = 323/323 (100%)

Query: 1   MTMDKAESEILLAQPRGFCAGVDRAIEIVERALAQFGAPIYVRHEIVHNAYVVNDLRAKG 60
           MTMDKAESEILLAQPRGFCAGVDRAIEIVERALAQFGAPIYVRHEIVHNAYVVNDLRAKG
Sbjct: 1   MTMDKAESEILLAQPRGFCAGVDRAIEIVERALAQFGAPIYVRHEIVHNAYVVNDLRAKG 60

Query: 61  AVFIEELADVPAGSTVIFSAHGVSKAIQAEAAERGLTVFDATCPLVTKVHMEVAKMRREG 120
           AVFIEELADVPAGSTVIFSAHGVSKAIQAEAAERGLTVFDATCPLVTKVHMEVAKMRREG
Sbjct: 61  AVFIEELADVPAGSTVIFSAHGVSKAIQAEAAERGLTVFDATCPLVTKVHMEVAKMRREG 120

Query: 121 REIIMIGHAGHPEVEGTMGQTEAGMHLVETVEDVQRLQVADPALLAYVSQTTLSVDDTAE 180
           REIIMIGHAGHPEVEGTMGQTEAGMHLVETVEDVQRLQVADPALLAYVSQTTLSVDDTAE
Sbjct: 121 REIIMIGHAGHPEVEGTMGQTEAGMHLVETVEDVQRLQVADPALLAYVSQTTLSVDDTAE 180

Query: 181 IIAALRERFPAISEPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRELAE 240
           IIAALRERFPAISEPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRELAE
Sbjct: 181 IIAALRERFPAISEPKKGDICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLRELAE 240

Query: 241 KKGVAAFMVDNAALIDPLWIQGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLEGI 300
           KKGVAAFMVDNAALIDPLWIQGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLEGI
Sbjct: 241 KKGVAAFMVDNAALIDPLWIQGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLEGI 300

Query: 301 EENVTFPLPKGLGTRTAPNETAA 323
           EENVTFPLPKGLGTRTAP+ETAA
Sbjct: 301 EENVTFPLPKGLGTRTAPSETAA 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,882
Number of extensions: 38674
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)