BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0324.p
         (600 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange tra...  1187   0.0  

>gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 1187 bits (3071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/600 (99%), Positives = 598/600 (99%)

Query: 1   MTPRISADPRKPLPRLPLLMWLAVLALLGLLAAKAAQAAEDYLPPEQAFQLSGRMVDAQT 60
           MTPRISADPRKPLPRLPLLMWLAVLALLGLLAAKAAQAAEDYLPPEQAFQLSGRMVDAQT
Sbjct: 1   MTPRISADPRKPLPRLPLLMWLAVLALLGLLAAKAAQAAEDYLPPEQAFQLSGRMVDAQT 60

Query: 61  LELSYRIADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQQEVETYHQSVTARVPV 120
           LELSYRIADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQQEVETYHQSVTARVPV
Sbjct: 61  LELSYRIADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQQEVETYHQSVTARVPV 120

Query: 121 SGAVDRFVVAAVSQGCADKGLCYPPMTLKLTMSTQAIGQSVSPAGAEGAVQGSAGGSDID 180
           SGAVD+FVVAAVSQGCADKGLCYPPMTLKLTMS QAIGQSVSPAGAEGAVQGSAGGSDID
Sbjct: 121 SGAVDKFVVAAVSQGCADKGLCYPPMTLKLTMSAQAIGQSVSPAGAEGAVQGSAGGSDID 180

Query: 181 GIAAVLKGGKLWSILSLFFVLGIGLSFTPCVLPMLPILSSIIVGQQPAVGGGRGRSFLLS 240
           GIAAVLKGGKLWSILSLFFVLGIGLSFTPCVLPMLPILSSIIVGQQPA GGGRGRSFLLS
Sbjct: 181 GIAAVLKGGKLWSILSLFFVLGIGLSFTPCVLPMLPILSSIIVGQQPAAGGGRGRSFLLS 240

Query: 241 VDYSLGMALVYTGLGVVAGMLGEGLSAYLQNPWVLGAFALLMAGLALSMFDLYTLQVPAS 300
           V+YSLGMALVYTGLGVVAGMLGEGLSAYLQNPWVLGAFALLMAGLALSMFDLYTLQVPAS
Sbjct: 241 VNYSLGMALVYTGLGVVAGMLGEGLSAYLQNPWVLGAFALLMAGLALSMFDLYTLQVPAS 300

Query: 301 LQSKLSTASGGGSGKWLGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVMLGGSALFA 360
           LQSKLSTASGGGSGKWLGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVMLGGSALFA
Sbjct: 301 LQSKLSTASGGGSGKWLGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVMLGGSALFA 360

Query: 361 MAMGMSVPLLLIGASAGTLLPRAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWA 420
           MAMGMSVPLLLIGASAGTLLPRAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWA
Sbjct: 361 MAMGMSVPLLLIGASAGTLLPRAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWA 420

Query: 421 ALGVGYGAFLLWTRPAGWIARAFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAH 480
           ALGVGYGAFLLWTRPAGWIARAFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAH
Sbjct: 421 ALGVGYGAFLLWTRPAGWIARAFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAH 480

Query: 481 ATDFVRIRSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQM 540
           ATDFVRIRSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQM
Sbjct: 481 ATDFVRIRSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQM 540

Query: 541 LLLQIDVTANNADDRAMLKRFNLFGPPGIMFFDADGRELASRRVIGYQDANRFISALQNL 600
           LLLQIDVTANNADDRAMLKRFNLFGPPGIMFFDADGRELASRRVIGYQDA+RFISALQNL
Sbjct: 541 LLLQIDVTANNADDRAMLKRFNLFGPPGIMFFDADGRELASRRVIGYQDADRFISALQNL 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,888,729
Number of extensions: 83999
Number of successful extensions: 377
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 509
Effective length of database: 1,188,985
Effective search space: 605193365
Effective search space used: 605193365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)