BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0314.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...   436   e-124
gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...   101   5e-23
gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553 pro...    58   5e-10
gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553 pro...    58   6e-10

>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  436 bits (1120), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   LYSVFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVACVSCHGAAGNSTI 60
           LYSVFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVACVSCHGAAGNSTI
Sbjct: 9   LYSVFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVACVSCHGAAGNSTI 68

Query: 61  TQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQAPKPGAA 120
           TQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQAPKPGAA
Sbjct: 69  TQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQAPKPGAA 128

Query: 121 KNKDTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVAQLTNFRG 180
           KNKDTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVAQLTNFRG
Sbjct: 129 KNKDTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVAQLTNFRG 188

Query: 181 GARTNSVQMTTISERLSDKEIKAVADYIAGLK 212
           GARTNSVQMTTISERLSDKEIKAVADYIAGLK
Sbjct: 189 GARTNSVQMTTISERLSDKEIKAVADYIAGLK 220


>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  101 bits (252), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%)

Query: 42  ARNIVACVSCHGAAGNSTIT-QNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSD 100
           A  + AC +CHG  G +T     P++AG+ EAY+  QL +FR   R  P+M+ +   LSD
Sbjct: 46  AERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANLSD 105

Query: 101 EDIHNVAAFLAAQ-APKPGAAKNK---DTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGI 156
           + +  +A F A Q  P P  A N+     ++ G+ +   G   + +PACA CH+P+  G+
Sbjct: 106 DYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLGGV 165

Query: 157 PAQYPRLAGQHQDYTVAQLTNFRGGARTNSVQ--MTTISERLSDKEIKAVADYIA 209
               P L G  +DY  AQL  +R G RT      M  ++  LS +EI A + +++
Sbjct: 166 QPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLS 220


>gi|300310945|ref|YP_003775037.1| periplasmic cytochrome c553
           protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 58.2 bits (139), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 20/115 (17%)

Query: 4   VFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVA-CVSCHGAAGNST--- 59
           VF A + V  +A AAD               +  N  +A N V+ C+ CHG  G      
Sbjct: 6   VFLALVGVVGSASAAD---------------IVGNAKAAENKVSMCIGCHGIPGYKASYP 50

Query: 60  -ITQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQ 113
            + Q P L GQ  AYI   L  ++  +R +P M  +A +LSD+DI ++AA+ + Q
Sbjct: 51  EVYQVPMLGGQSAAYIESALRAYQKGERKHPSMMGVAASLSDQDIADLAAYYSQQ 105


>gi|300310946|ref|YP_003775038.1| periplasmic cytochrome c553
           protein [Herbaspirillum seropedicae SmR1]
          Length = 117

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 38  NGDSARNIVACVSCHGAAGNS-TITQNPKLAGQHEAYIAKQLLNFRTPD-----RNNPVM 91
           NG +      C SCHG   NS T    PKLAGQH  Y+   L  +R  +     RNN +M
Sbjct: 28  NGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQHADYLKHALTAYRRGNTAMNGRNNAIM 87

Query: 92  SPMAKALSDEDIHNVAAFL 110
           S  AK LSD DI+++AA+L
Sbjct: 88  SAQAKPLSDRDINDIAAYL 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,843
Number of extensions: 24545
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)