BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0312.p
         (697 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis tr...  1365   0.0  

>gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 1365 bits (3532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/688 (99%), Positives = 684/688 (99%), Gaps = 1/688 (0%)

Query: 11  MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 70
           MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM
Sbjct: 1   MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 60

Query: 71  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV 130
           GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV
Sbjct: 61  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV 120

Query: 131 GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 190
           GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG
Sbjct: 121 GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 180

Query: 191 KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIQL 250
           KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTI+L
Sbjct: 181 KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIRL 240

Query: 251 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL 310
           KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL
Sbjct: 241 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL 300

Query: 311 KLVGYPMRGGSNSHFALSGVVNGSTALPAGLGDYTIEWSGFRPFNVENMQA-SGGGSTSG 369
           KLVGYPMRGGSNSHFALSGVVNGSTALPAGLGDYTIEWSGFRPFNVENMQA  GGGSTSG
Sbjct: 301 KLVGYPMRGGSNSHFALSGVVNGSTALPAGLGDYTIEWSGFRPFNVENMQASGGGGSTSG 360

Query: 370 DARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYFNYM 429
           DARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYFNYM
Sbjct: 361 DARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYFNYM 420

Query: 430 QSLPIDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAARRYA 489
           QSL IDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAARRYA
Sbjct: 421 QSLSIDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAARRYA 480

Query: 490 RQAISNGREASPVLREQLQQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAADIF 549
           RQAISNGREASPVLREQLQQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAADIF
Sbjct: 481 RQAISNGREASPVLREQLQQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAADIF 540

Query: 550 MKILNGSMWELWQAARAQDGLEPVASDEAHGRYLQLAINALADAAFYPAPVFLQLSSFEE 609
           MKILNGSMWELWQAARAQDGLEPVASDE HGRYLQLAINALADAAFYPAPVFLQLSSFEE
Sbjct: 541 MKILNGSMWELWQAARAQDGLEPVASDEPHGRYLQLAINALADAAFYPAPVFLQLSSFEE 600

Query: 610 IKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPAADGQGSQALLAMST 669
           IKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPAADGQGSQALLAMST
Sbjct: 601 IKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPAADGQGSQALLAMST 660

Query: 670 QRRTLDFDKEFEQMKARVSGDAAPPPSA 697
           QRRTLDFDKEFEQMKARVSGDAAPPPSA
Sbjct: 661 QRRTLDFDKEFEQMKARVSGDAAPPPSA 688


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,179,722
Number of extensions: 94620
Number of successful extensions: 295
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 605
Effective length of database: 1,184,250
Effective search space: 716471250
Effective search space used: 716471250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)