BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0310.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...   433   e-123
gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   100   1e-22
gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb...    65   3e-12

>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score =  433 bits (1114), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 214/215 (99%)

Query: 1   MNDFATSPALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIA 60
           MNDFATSPALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIA
Sbjct: 1   MNDFATSPALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIA 60

Query: 61  HVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLRIPFALASNAPHHKIEL 120
           HVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQL+IPFALASNAPHHKIEL
Sbjct: 61  HVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLQIPFALASNAPHHKIEL 120

Query: 121 CLRVTGLLPHFQGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLA 180
           CLRVTGLLPHF GRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLA
Sbjct: 121 CLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLA 180

Query: 181 AGMKVIALQEHGVHPDLPEEVAVITHLGQLHPHLA 215
           AGMKVIALQEHGVHPDLPEEVAVITHLGQLHPHLA
Sbjct: 181 AGMKVIALQEHGVHPDLPEEVAVITHLGQLHPHLA 215


>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 98/201 (48%), Gaps = 29/201 (14%)

Query: 11  VIFDCDGTLVDSEVVAAR-----------AWSEYVATYGVQLTPEDALARFRGVSMSWCI 59
           +I DCDG L+DSE +A R           AWS      G     +      R  ++   I
Sbjct: 10  LICDCDGVLLDSESIALRVLHRELLPLLPAWS------GAGGADDGEQEEQRSAALHAAI 63

Query: 60  AHVAQLRGQAL----PAHFEQELRARMGVMLEQHLQ--------PINGALEMVEQLRIPF 107
           AH   +    L       FE  L A     + Q +         P+ G +E ++ +R+P 
Sbjct: 64  AHRLGMYTDILLGEVDMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIRLPR 123

Query: 108 ALASNAPHHKIELCLRVTGLLPHFQGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAV 167
           A+ASN+   +IE  LR  GL P F GRI+S +DV   KP P ++L AA   GV P+RC  
Sbjct: 124 AVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSRCVA 183

Query: 168 VEDSLPGVQAGLAAGMKVIAL 188
           V+DS+ GV+A +AAGM V+  
Sbjct: 184 VDDSVTGVRAAVAAGMHVLGF 204


>gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 8/182 (4%)

Query: 12  IFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIAHV--AQLRGQA 69
           +FD DGTL+DS+ +   A++  +A +   +  E       G S +    H+       Q 
Sbjct: 66  LFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPGMPAEQY 125

Query: 70  LPAHFEQELRARMGVMLEQHLQPINGALEMVEQLRI---PFALASNAPHHKIELCLRVTG 126
           LP   E+E   R    L+Q ++P  G   ++E +R      A+ +NAP    EL L+ TG
Sbjct: 126 LPLAEEKESLFR--SQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELMLKATG 183

Query: 127 LLPHFQGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLAAGMKVI 186
           L   F   +    ++ R KPDP  +L   + LG         EDS  GV+A  +AG+   
Sbjct: 184 LAGQFDTLVIGD-ELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGIWTF 242

Query: 187 AL 188
            +
Sbjct: 243 GM 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 756,711
Number of extensions: 32284
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)