BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0300.p
         (498 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309507|ref|YP_003773599.1| carboxy-terminal processing pro...  1000   0.0  

>gi|300309507|ref|YP_003773599.1| carboxy-terminal processing
           protease transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 498

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/498 (99%), Positives = 498/498 (100%)

Query: 1   MGSKLKNIGLIGLGMVAGATAMIQFDAIAQKNATASLPLEELRQMADVFGLIKSDYVEQV 60
           MGSKLKNIGLIGLGMVAGATAMIQFDAIAQKNATASLPLEELRQMADVFGLIKSDYVEQV
Sbjct: 1   MGSKLKNIGLIGLGMVAGATAMIQFDAIAQKNATASLPLEELRQMADVFGLIKSDYVEQV 60

Query: 61  DDKKLLTEAISGMVSSLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI 120
           DDKKLLTEAISGMVSSLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI
Sbjct: 61  DDKKLLTEAISGMVSSLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI 120

Query: 121 EDSPAFRAGIKAGDLITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARKEEDKPIILT 180
           EDSPAFRAGIKAGDLITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARK+EDKPIILT
Sbjct: 121 EDSPAFRAGIKAGDLITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIILT 180

Query: 181 ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLRND 240
           ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLRND
Sbjct: 181 ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLRND 240

Query: 241 PGGVLPGAIGVAAAFLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDAIK 300
           PGGVLPGAIGVAAAFLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDAIK
Sbjct: 241 PGGVLPGAIGVAAAFLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDAIK 300

Query: 301 KVPMVVLINSGSASASEIVAGALQDYKRATIMGTQSFGKGSVQSVIALPPEKNTAVKLTT 360
           KVPMVVLINSGSASASEIVAGALQDYKRATIMGTQSFGKGSVQSVIALPPEKNTAVKLTT
Sbjct: 301 KVPMVVLINSGSASASEIVAGALQDYKRATIMGTQSFGKGSVQSVIALPPEKNTAVKLTT 360

Query: 361 ARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSAEVKAKSM 420
           ARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSAEVKAKSM
Sbjct: 361 ARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSAEVKAKSM 420

Query: 421 DEQAEERLIAAEKKRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKNDTPV 480
           DEQ+EERLIAAEKKRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKNDTPV
Sbjct: 421 DEQSEERLIAAEKKRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKNDTPV 480

Query: 481 KDERKDNKAPAEKIDTTK 498
           KDERKDNKAPAEKIDTTK
Sbjct: 481 KDERKDNKAPAEKIDTTK 498


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,522,121
Number of extensions: 65195
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 409
Effective length of database: 1,198,455
Effective search space: 490168095
Effective search space used: 490168095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 132 (55.5 bits)