BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0299.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme p...   421   e-119
gi|300310571|ref|YP_003774663.1| transmembrane protein [Herbaspi...    60   1e-10

>gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/210 (98%), Positives = 209/210 (99%)

Query: 1   MYLASAGVGRITLVDHDTVDLTNLQRQIMHTTSRVGQPKVESGRQALEQINPGVQVTALA 60
           MYLASAGVGRITLVDHDTVDLTNLQRQIMHTT+RVGQPKVESGRQALEQINPGVQVTALA
Sbjct: 45  MYLASAGVGRITLVDHDTVDLTNLQRQIMHTTARVGQPKVESGRQALEQINPGVQVTALA 104

Query: 61  ERVEAERLHALVAQADVVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDPR 120
           ERVEAERLHALVAQADVVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDPR
Sbjct: 105 ERVEAERLHALVAQADVVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDPR 164

Query: 121 QDASPCYACLFPPEREFEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLI 180
           QDASPCYACLFPPEREFEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLI
Sbjct: 165 QDASPCYACLFPPEREFEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLI 224

Query: 181 LDAREMEWTSITVGRDRQCSVCAQRHARQA 210
           LDAREMEWTSITVGRDRQC VCA+RHA+QA
Sbjct: 225 LDAREMEWTSITVGRDRQCPVCAKRHAQQA 254


>gi|300310571|ref|YP_003774663.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 9/122 (7%)

Query: 3   LASAGVGRITLVDHDTVDLTNLQRQIMHTTSRVGQPKVESGRQALEQINPGVQVTALAER 62
           LA + +G +TLVD D +  +N+ RQI   T+ +GQ KV +  + + QINP   VT + + 
Sbjct: 52  LARSAIGHLTLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDF 111

Query: 63  VEAERLHALVA--QADVVLDCSDNFATRHAVNRACVAAGVPLVS-GAAIRFDGQVSVFDP 119
           V+ + +  ++   + D V+D  DN   + A+   C   G+P+V+ G+A    GQ+   DP
Sbjct: 112 VDPDNVEKMLGGERFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSA---GGQI---DP 165

Query: 120 RQ 121
            Q
Sbjct: 166 TQ 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,084
Number of extensions: 26990
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)