BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0284.p (241 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 475 e-135 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 475 e-135 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 230 8e-62 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 228 2e-61 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 221 5e-59 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 475 bits (1222), Expect = e-135, Method: Compositional matrix adjust. Identities = 237/241 (98%), Positives = 237/241 (98%) Query: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 EGHIEYLGQALKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 EGHIEYLGQ LKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMRGMAPALMSHPKLLLLDEPSMGLSPIMVEKIF 180 DKWFAVFPRLKERAAQMAGTLSGGEQQM MA ALMSHPKLLLLDEPSMGLSPIMVEKIF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 241 G 241 G Sbjct: 241 G 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 475 bits (1222), Expect = e-135, Method: Compositional matrix adjust. Identities = 237/241 (98%), Positives = 237/241 (98%) Query: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 EGHIEYLGQALKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 EGHIEYLGQ LKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMRGMAPALMSHPKLLLLDEPSMGLSPIMVEKIF 180 DKWFAVFPRLKERAAQMAGTLSGGEQQM MA ALMSHPKLLLLDEPSMGLSPIMVEKIF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 241 G 241 G Sbjct: 241 G 241 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 230 bits (587), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 115/235 (48%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 IL+V+ L+VAYG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 Query: 65 EYLGQALKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 GQ L +V+ + V EGR T ++++ENL +GAYT DK +A D++ + Sbjct: 68 LLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVY 127 Query: 125 AVFPRLKERAAQMAGTLSGGEQQMRGMAPALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 ++FP LK RAA +AG LSGGEQQM + ALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 128 SLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 Query: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 ++ G+T+LLVEQN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 228 bits (582), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 6/241 (2%) Query: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 +L + L AYG ++ + GI +EV +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGEV 58 Query: 65 EYLGQALKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAADI 120 G+ + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 59 TLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDL 118 Query: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMRGMAPALMSHPKLLLLDEPSMGLSPIMVEKIF 180 ++ +FPRLKER +Q+AGTLSGGEQQM MA A+M +P+++LLDEPSMGL+PI+V+++F Sbjct: 119 ERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 +I + QG+T+LLVEQ A AL A GYV+E+G I++ G A ++ +DP VKAAYLG Sbjct: 179 RIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 Query: 241 G 241 G Sbjct: 239 G 239 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 221 bits (563), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 165/241 (68%), Gaps = 5/241 (2%) Query: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 M +L+V+ LS AYG ++ + GIDL V +G++VT+IG NGAGKTT L AI G LP+ Sbjct: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPS--- 57 Query: 61 EGHIEYLGQALKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQ--IAA 118 G + + G + E+V + +VPE R +F M+I++NL++GA+ GQ AA Sbjct: 58 RGAMAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAA 117 Query: 119 DIDKWFAVFPRLKERAAQMAGTLSGGEQQMRGMAPALMSHPKLLLLDEPSMGLSPIMVEK 178 +++ + +FPRL+ER +Q AGTLSGGE+QM + ALM+ P+LL+LDEPS+GL+P++V + Sbjct: 118 TLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVRE 177 Query: 179 IFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYL 238 IF +I + +G++ILLVEQNA+ AL+ A GYV+E+G I M G A Q+ D RV AYL Sbjct: 178 IFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYL 237 Query: 239 G 239 G Sbjct: 238 G 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 713,399 Number of extensions: 29202 Number of successful extensions: 479 Number of sequences better than 1.0e-08: 116 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 128 Length of query: 241 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 158 Effective length of database: 1,226,865 Effective search space: 193844670 Effective search space used: 193844670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)