BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0276.p (513 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 1032 0.0 gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 416 e-117 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/513 (99%), Positives = 512/513 (99%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 Query: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLEAARAGIEEAQYAVLD 180 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLEAARAGIEEAQYAVLD Sbjct: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLEAARAGIEEAQYAVLD 180 Query: 181 KAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLLRYGQWR 240 KAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLLRYGQWR Sbjct: 181 KAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLLRYGQWR 240 Query: 241 LRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFKKALHWL 300 LRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFKKALHWL Sbjct: 241 LRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFKKALHWL 300 Query: 301 ERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQVCWRHRR 360 ERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQVCWRHRR Sbjct: 301 ERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQVCWRHRR 360 Query: 361 DDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRNSSPFLS 420 DDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRNSSPFLS Sbjct: 361 DDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRNSSPFLS 420 Query: 421 ARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTEAQRATLNRV 480 ARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQT+AQRATLNRV Sbjct: 421 ARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTDAQRATLNRV 480 Query: 481 SRLFGDVDCGFDGLEGNYRQRQYRLRTTFPDLG 513 SRLFGDVDCGFDGLEGNYRQRQYRLRTTFP LG Sbjct: 481 SRLFGDVDCGFDGLEGNYRQRQYRLRTTFPGLG 513 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust. Identities = 265/517 (51%), Positives = 337/517 (65%), Gaps = 8/517 (1%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MA RE+LA+I+AARAG++ AQL LG+RYL GG+GLP+S TAF+WL RAA+Q + DAWM+ Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 I +I YE V L+ P+EAA WYE+AFE G+ +AGL FARLVL++ E + ARAI Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAELKARAIRV 120 Query: 121 LSLLASRDDHEAQWLLAQQ-----MQRHGQPMLPGAAAASPAYED--KLMLEAARAGIEE 173 L ++A D +AQWLLA+Q + A A ED + +AA AGIE+ Sbjct: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAGIEQ 180 Query: 174 AQYAVLDKAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLL 233 AQ+A+ D AWQQ D F + AQ + +LL ++ VAQL + A L + LL Sbjct: 181 AQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEAL-ATALGPQNIVLL 239 Query: 234 LRYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANF 293 R Q L D + Q L ELAA+ + A L LGLL ++D QG R F G AN+ Sbjct: 240 RRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANY 299 Query: 294 KKALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQ 353 KKA+ WL AGE G+A W+ L+RIY + +SQRNL QHYLE+AA+ G V AQ E Sbjct: 300 KKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGI 359 Query: 354 VCWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLR 413 WR+RRD+ NDV+ALYW Q+AA+QG+ AQA LD A +P A WA+ A+A LT + Sbjct: 360 GAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQV 419 Query: 414 NSSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTEAQ 473 N+ PFL+ARIELA FGLT+PEALLID+K AD GHCL+VDI + +ARSKRRLI V+ Q Sbjct: 420 NAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQ 479 Query: 474 RATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510 R LNR+ RLF DVDCG G EGNYRQR YRL+T P Sbjct: 480 RGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLP 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,528,539 Number of extensions: 60993 Number of successful extensions: 278 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 2 Length of query: 513 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 424 Effective length of database: 1,198,455 Effective search space: 508144920 Effective search space used: 508144920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)