BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0266.p
         (629 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum se...  1234   0.0  

>gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score = 1234 bits (3192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/595 (99%), Positives = 595/595 (100%)

Query: 35  MPSTSSLELGVIGNCAFSALVDKMGRIVWCCLPRFDGDPVFNALLDPTENGALWAFQLEN 94
           MPSTSSLELGVIGNCAFSALVDKMGRIVWCCLPRFDGDPVFNALLDPT+NGALWAFQLEN
Sbjct: 1   MPSTSSLELGVIGNCAFSALVDKMGRIVWCCLPRFDGDPVFNALLDPTDNGALWAFQLEN 60

Query: 95  FSHSEQWYEPNTAVLRTRLYDTLGQGIEITDLAPRFQSRGRFFRPLQLVRRIHPLSGAPR 154
           FSHSEQWYEPNTAVLRTRLYDTLGQGIEITDLAPRFQSRGRFFRPLQLVRRIHPLSGAPR
Sbjct: 61  FSHSEQWYEPNTAVLRTRLYDTLGQGIEITDLAPRFQSRGRFFRPLQLVRRIHPLSGAPR 120

Query: 155 MRVVLRPKFDWGREEPLQTRGSNHIRYVGQEQTLRLNTDAPISYIVGETAFVVSRPYNFI 214
           MRVVLRPKFDWGREEPLQTRGSNHIRYVGQEQTLRLNTDAPISYIVGETAFVVSRPYNFI
Sbjct: 121 MRVVLRPKFDWGREEPLQTRGSNHIRYVGQEQTLRLNTDAPISYIVGETAFVVSRPYNFI 180

Query: 215 LGPDETLHGGINDTARDFEQETTAYWRNWSRALATPLEWQDAVIRAAITLKLSVYEDTGA 274
           LGPDETLHGGINDTARDFEQETTAYWRNWSRALATPLEWQDAVIRAAITLKLSVYEDTGA
Sbjct: 181 LGPDETLHGGINDTARDFEQETTAYWRNWSRALATPLEWQDAVIRAAITLKLSVYEDTGA 240

Query: 275 IIAAMTTSVPEAPGSQRNWDYRYCWLRDAFFVVRALNSLSELGTMEDYLRWLTNVVVRSG 334
           IIAAMTTSVPEAPGSQRNWDYRYCWLRDAFFVVRALNSLSELGTMEDYLRWLTNVVVRSG
Sbjct: 241 IIAAMTTSVPEAPGSQRNWDYRYCWLRDAFFVVRALNSLSELGTMEDYLRWLTNVVVRSG 300

Query: 335 GGHVQPLYGIGLEEALPEQILDHLPGYQHHQPVRVGNQAYEHFQHDVYGNIVLGAAQAFH 394
           GGHVQPLYGIGLEEALPEQILDHLPGYQHHQPVRVGNQAYEHFQHDVYGNIVLGAAQAFH
Sbjct: 301 GGHVQPLYGIGLEEALPEQILDHLPGYQHHQPVRVGNQAYEHFQHDVYGNIVLGAAQAFH 360

Query: 395 DMRLHHRAGAEHFQHLEAVGERAYEVYSQPDAGMWELRTRSRIHTSSALMSWAACDRLAK 454
           DMRLHHRAGAEHFQHLEAVGERAYEVYSQPDAGMWELRTRSRIHTSSALMSWAACDRLAK
Sbjct: 361 DMRLHHRAGAEHFQHLEAVGERAYEVYSQPDAGMWELRTRSRIHTSSALMSWAACDRLAK 420

Query: 455 IAARVDLPERARYWGDRAKEIGDRILTEAWNEQRQAYAESFGGRDLDASVLLMVEVGLIS 514
           IAARVDLPERARYWGDRAKEIGDRILTEAWNEQRQAYAESFGGRDLDASVLLMVEVGLIS
Sbjct: 421 IAARVDLPERARYWGDRAKEIGDRILTEAWNEQRQAYAESFGGRDLDASVLLMVEVGLIS 480

Query: 515 PTDPRFISTVEALEKSLCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAR 574
           PTDPRFISTVEALEKSLCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAR
Sbjct: 481 PTDPRFISTVEALEKSLCDGPYMRRYEAPDDFGRPETAFNICTFWRIDALARIGRKEQAR 540

Query: 575 EIFQAMLDARNHLGLLSEDTHPVTRQMWGNFPQTYSMVGIINCAMRLSASWEAVI 629
           EIFQAMLDARNHLGLLSEDTHPVTRQMWGNFPQTYSMVGIINCAMRLSASWEAVI
Sbjct: 541 EIFQAMLDARNHLGLLSEDTHPVTRQMWGNFPQTYSMVGIINCAMRLSASWEAVI 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,173,647
Number of extensions: 96752
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 538
Effective length of database: 1,188,985
Effective search space: 639673930
Effective search space used: 639673930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)