BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0256.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   792   0.0  
gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   130   2e-31

>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/387 (99%), Positives = 387/387 (100%)

Query: 1   LRHLTFTDGNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAA 60
           +RHLTFTDGNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAA
Sbjct: 1   MRHLTFTDGNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAA 60

Query: 61  GRGVVVYVINDWLGTGRENTNKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 120
           GRGVVVYVINDWLGTGRENTNKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA
Sbjct: 61  GRGVVVYVINDWLGTGRENTNKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 120

Query: 121 FVGGLNINDDMVSDRDHMTPLPAPRWDFAVSILGPLVQEIYREVQAQWLRVGHMKLKARW 180
           FVGGLNINDDMVSDRDHMTPLPAPRWDFAVSILGPLVQEIYREVQAQWLRVGHMKLKARW
Sbjct: 121 FVGGLNINDDMVSDRDHMTPLPAPRWDFAVSILGPLVQEIYREVQAQWLRVGHMKLKARW 180

Query: 181 RNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLANPYFAPGR 240
           RNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLANPYFAPGR
Sbjct: 181 RNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLANPYFAPGR 240

Query: 241 KMRRALEEAAMRGVKVTLLLGVGQFMMQDAVAHSFYPKLLRAGVRIIEYTRTELHAKVAV 300
           KMRRALEEAAMRGVKVTLLLGVGQFMMQDAVAHSFYPKLLRAGVRIIEYTRTELHAKVAV
Sbjct: 241 KMRRALEEAAMRGVKVTLLLGVGQFMMQDAVAHSFYPKLLRAGVRIIEYTRTELHAKVAV 300

Query: 301 VDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVVHLADFMHVP 360
           VDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVVHLADFMHVP
Sbjct: 301 VDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVVHLADFMHVP 360

Query: 361 WYKRAAYGAAFLLYRTVIHIITLGKDA 387
           WYKRAAYGAAFLLYRTVIHIITLGKDA
Sbjct: 361 WYKRAAYGAAFLLYRTVIHIITLGKDA 387


>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 160/344 (46%), Gaps = 29/344 (8%)

Query: 9   GNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAAGRGVVVYV 68
           GN++ LL  G   Y ++  AI AAR  I +ETYI   D+ G    + L     +GV V +
Sbjct: 95  GNKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQNKGVQVNL 154

Query: 69  INDWLGTGRENTNKLHL-ALSAAGVQHRSFNPW----FRRG---VARSHRKLCVVDRQVA 120
           + D    G  NT +     +  AG+Q   +NP      R+      R HRKL VVD + A
Sbjct: 155 MYD--SVGALNTPRTFFQPMIDAGIQVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTA 212

Query: 121 FVGGLNINDDMVSDRDHMTPLPAPR---------W-DFAVSILGPLVQEIYREVQAQWLR 170
           FVGG+NI+    S     T    PR         W D  V I GP+  E  +     W +
Sbjct: 213 FVGGINISSVYSSGS-FSTRKKKPRVNAEGEQIPWRDTQVRIDGPVALEFQKLFVDTWNK 271

Query: 171 VGHMKLKARWRNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAF 230
                L    R F  +      P  ++   A+    +      I   ++ A+  A ++ +
Sbjct: 272 QRGPALGDH-RYFPTV-----APAGNEIVRAIGSSPD-DPYSVIYATFISAIQHAEKAIY 324

Query: 231 LANPYFAPGRKMRRALEEAAMRGVKVTLLLGV-GQFMMQDAVAHSFYPKLLRAGVRIIEY 289
           L N YF P  ++R +L++AA RGV V L+L       +    + SFY +LL AG+RI E 
Sbjct: 325 LTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASRSFYQELLEAGIRIYER 384

Query: 290 TRTELHAKVAVVDDKWATVGSSNYDGLSLFVNQEANVVVQDPAF 333
               LH+K A++D  W+T+GS+N D  S   NQE N V+  P F
Sbjct: 385 QDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQF 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,242,961
Number of extensions: 51600
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 3
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)