BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0253.p (215 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 425 e-120 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 228 4e-61 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 223 9e-60 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 206 1e-54 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 110 6e-26 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 425 bits (1092), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/215 (99%), Positives = 213/215 (99%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP Sbjct: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLVLMGVCFYGPALAGVGTVE LPAAATAMLIY SAFLGEIWRGCIQSVHKSQWEAAECI Sbjct: 61 LLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAFLGEIWRGCIQSVHKSQWEAAECI 120 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ Sbjct: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR Sbjct: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 228 bits (580), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/214 (53%), Positives = 157/214 (73%), Gaps = 2/214 (0%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 S + + LL+ A T+LLS L L GG+AG +AL R S L PLR L+A +IQ+IQGTP Sbjct: 5 FSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTP 64 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 +L+L+ + FYG A+ G ++ AA AM IY+SA+LGEIWRGCI++V QWEA+ + Sbjct: 65 VLILLFLSFYGLAIFGYKLPPMV-AATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTAL 123 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 ++RWQ++R ++LPQA+R++ PPTVGF VQ++KNTS+AS +IG EL+ K+++N+TFQ Sbjct: 124 AMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIAS-IIGLVELAQAGKLVSNATFQ 182 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHR 214 PFL F A +YF CYPLSR++ ALERK HAHR Sbjct: 183 PFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 223 bits (568), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 110/207 (53%), Positives = 154/207 (74%), Gaps = 2/207 (0%) Query: 9 LLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTPLLVLMGVC 68 LLQ A TV+LS + + GG+AG +AL RVS LR +A+ +IQ++QG PLLV++ V Sbjct: 12 LLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVA 71 Query: 69 FYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECIGLSRWQRM 128 ++G A+AG + L AA + IY +AFLGEIWRGCIQ+V K+QWEA+EC+G +R++++ Sbjct: 72 YFGLAIAGF-KLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQL 130 Query: 129 RMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQPFLYFGSA 188 ++LPQA+++ATPPTVGF VQ++KNTS+AS VIGF +LS +++NNSTFQPF FG Sbjct: 131 TKVILPQAVKIATPPTVGFMVQIVKNTSLAS-VIGFVDLSRAGQIINNSTFQPFTVFGCV 189 Query: 189 ALLYFAMCYPLSRWSRALERKLHAHRR 215 AL+YF +C+PLS S+ ERKL+ R Sbjct: 190 ALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 206 bits (524), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 99/200 (49%), Positives = 145/200 (72%), Gaps = 2/200 (1%) Query: 16 TVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALA 75 T++LS L +LGG G + LAR+S LRR A +I+ +QG PLL+L+ + ++G ++ Sbjct: 20 TLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFGLSVY 79 Query: 76 GVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQ 135 G+ + L AA AM+IY SA+LG+IWRGC++++ + QWEA+EC+ L+RWQ +R++++PQ Sbjct: 80 GL-VLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVIIPQ 138 Query: 136 ALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAM 195 A R++ PPT+GF VQ+IK TS+AS VIGF EL+ +++NNS FQPFL F YF + Sbjct: 139 ATRLSLPPTIGFLVQLIKMTSLAS-VIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFLL 197 Query: 196 CYPLSRWSRALERKLHAHRR 215 CYPLSRWS ++ERKL+ R Sbjct: 198 CYPLSRWSASMERKLNVSHR 217 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 110 bits (276), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 15/221 (6%) Query: 5 QLLSLLQGA-------WGTVLLSGLTLLLGGMA-GLALALARVSALRPLRRLAAAWIQLI 56 ++L LLQ A G LL L +LGG+ G LA+AR+ RP+ AA ++ ++ Sbjct: 4 EILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMM 63 Query: 57 QGTPLLVLMGVCFYGPALAGVGTVEVLP--AAATAMLIYASAFLGEIWRGCIQSVHKSQW 114 +GTPLLV + V +YG L G+G +E P A + + ASA+L E RG I V + QW Sbjct: 64 RGTPLLVQIFVVYYG--LPGMG-IEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQW 120 Query: 115 EAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVL 174 AA +GL+ +Q +R I++PQA+R+A P + +IK+TS+ S VI EL K + Sbjct: 121 NAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVS-VITVTELMLATKEV 179 Query: 175 NNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKL-HAHR 214 TF+P + +AA +Y+ + LE+KL AH+ Sbjct: 180 IAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.136 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 556,525 Number of extensions: 18458 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 19 Length of query: 215 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 134 Effective length of database: 1,236,335 Effective search space: 165668890 Effective search space used: 165668890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)